PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_5_00384

Common Name

CHLNCDRAFT_143055

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

GATA

Protein Properties

Length: 2459aa MW: 258021 Da PI: 5.0252

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_5_00384	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	22.1	2.1e-07	1124	1153	1	29
GATA 1 CsnCgttkTplWRrgp..dgnktLCnaCGly 29 C Cgtt++++WR+ p g++ LC CG + IGS.gm_5_00384 1124 CPVCGTTSSTQWRKPPgeAGHI-LCDDCGKR 1153 888********99999.****65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	1.8E-4	773	823	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	9.684	1118	1151	IPR000679	Zinc finger, GATA-type
SMART	SM00401	0.0029	1118	1167	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.52E-6	1120	1155	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.2E-6	1121	1156	IPR013088	Zinc finger, NHR/GATA-type
SMART	SM00401	0.069	1189	1246	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	6.6E-4	1193	1246	IPR013088	Zinc finger, NHR/GATA-type
SMART	SM00401	0.24	1781	1838	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2459 aa Download sequence Send to blast
MSAEVAHQGG FEADATAGGA APAPTSSGEA AQRLQQQAGA WVGGFLEDVQ ELGEGMAPLP 60 PELPHEAGSG GQDAGVLARP LRGKAQASQH DAESYAEAAV AAARRRTGAA DVASAAGAAD 120 GGQSGAPPSG QHAAVAEAEQ EQEQPAACTA AVLLPTPDMP LAEALAPHSA AAADQPLLEA 180 GRAASEQEAA AVEAVPAQPA VPGAEHEVED VTAAAQQQQY DTLLGMSGAA QQQLVPGVYD 240 PAVAQQQAFD ALVIGPLRTA QAAGGTGGAV APGATGAAGT TYTFEASGSG PAGRPPSQQA 300 AASGGRGRPG RPASQLAGAS NDAVASGMAS ALEQAQQEVE DQHPEQGVTE GHALPVVGVP 360 ATAAGEPVEQ SVQAPKHGGT KFRVRVPSNA RLGAAAAPPA APHGSRGVSE APPGSGKYKV 420 QARDVRIAGY QSEALAAAAH DHARIWWALR QQQPEGPGTA AQAASQDQVQ AAVLGLQGEL 480 NFPPVKFSSD AALLALLSGA TRQQLEEQLQ PFRLQQWEAA ARSAGQQQLQ AGVGSAAALN 540 QDNTTRFVGV LRITGSVKLQ AAITVDGTRE HLGAFDTPVE AAVVRDIGII WKQLHGLAGD 600 AMLNLPHSNL DKDAELVQEL RDAANPNALR AVLVRWVPKR LQDVVASLPG AEAGSQRAAG 660 TTLARVGSGA VHGSELPASP PPSAAGAAQG PPAAEDVGQP GAAHGAGALA CNGTSAGGGS 720 SGNSQQTSQQ QAGDGPEGGG GSSAGEGSED RNEEGDGDEE EQPGDSSDVS GSQLCSHCGD 780 DQCTGYQRHP SSGKLLCANC FSYLQRTGLD RPADVIQAYF ANRAAGMHAR TGRGNGHGSG 840 RGSGRDNSSS RRAAAGLDVV RGPGGSNRQA AAGRARQAAA RHPEDTVLSS DEGAAAADDE 900 SSEEESDLKE RRLRRQAQRH LDVQLQLRRQ PIAASAQGRV LPRRRNAAAG VAAAVAAAGA 960 SSSEEDEGRP ATSSDYEQQE ASESEEEFAE SEAEPVQQQQ HAAASAGGDG ASAFEWEDAG 1020 HSRMLKTINV AEAEARAFIF PESTWDDLAG GSNREVLVRH AYSGEEWRGY LSGTTLRLPG 1080 LFGKLELSAG SRLQLRVAAP KRELPLVECT LLMPEAVAAI GRKCPVCGTT SSTQWRKPPG 1140 EAGHILCDDC GKRVWQQRAE SLQQQQQQPL QPQQQPLHEQ PRDQPAVGTA AVRQCTHCGF 1200 LQPGPAGRQY YWRRHPTTRE QLCAPCGRYA DKHGGELPEL LEEEEQEDSE EQQDEDSEED 1260 EEEHPQRQPP QRQCLQCGST SKGSAKWAGW HRHPASGEEW LCHPCYRKVH NAIKRQQRQA 1320 EKQAQQEVES EVEPDEEEQS EEEEEEAAIA AAVKQCTHCG SLRPGPPGTK YSWRRHPTSK 1380 EQLCGRCWGH AHRHGGELPA LSDAEGEQEQ SEEEEEEQPP QQPQERQCLQ CASPTKGSGR 1440 WATWHRHPAT GEEWLCQPCF NKARAAIKRQ QRQPEKHPQE VESEEEEAQS EEEEEEEQLQ 1500 QQPPQRQCLQ CGSTSKGSSK SAGWHRHPAT GEEWLCQPCF NKARTAAMRQ QRQPEKHPQE 1560 VESEEEEAQS EEEEEEEQLQ QQPQQRQCLQ CGSTSKGSTK SAGWHRHPAT GEEWLCHPCY 1620 RKVHNAIKRQ QRQAEKQAQQ EEKSEVEPEG EEQSEEEEAA VAAAVKQCTH CGSLRPGPPG 1680 TSYSWRWHPT SKEQLCGPCC GYSDRHGGEL PVVAWKEAAA AATNQPKKKQ QGKRKQHGRQ 1740 PPAAPAVDEE PPVSPRQHKQ QRVADAATAV GAEGQSDAGA AGEQRLCSHC GADHAGPTPT 1800 YPWRKHATTG ARLCKDCWDF SRKHYGFLPE LPQPAEPPQP SQPEGQEEQP AAGKGRQRSG 1860 TRWASGQEQG DAAAGDAEAL QAPVLLSLPG RRVTRHQQHQ QEEQQHGAVE VEAQAATAAG 1920 QASRRRRRLS EVEGEAAAEE QQQPPSASEH KRGRRQLVQA EQEQTALLGS MHKRGRRQQE 1980 EQAEDTAEAE AGEKQKEQAA EPAAKRRRGK QQEVPEPPAA AVAAAPAEPV GASQASDSAG 2040 ATGRGGGECR WVNADSTALE VEVNGTCILS ETLVLPAAMA AKLTGLQAGG HLRLRDARTA 2100 NNRTAWNASL SDGRIEGKKL FSKLDVQEGD RLLLHRQAPA AAARAPGGRP PLLVAAKVAR 2160 EGPGEQALQQ ALAMAAAAAG VSAPAAVPGS GGEGAEPADG AGAGAPAAQQ EQPPPQDVAP 2220 AAAAAEAAMD ADEARQEQEP GAAAAEAQQQ AGEAEPAAAA VAAVQPAPAE GAGPRPELEG 2280 SMAGSGGGQQ EQAQHPGVAL RMFKQAREEP ARSSAPRGAG GNAAAGQRGP AAGGPPPAEP 2340 AGEPPAAAAA PAEPPPAAAG APPAVGVAAP GGSPASGASK EANDVLERLI LVLGSDAAAR 2400 QAGLTIDLIT DHQAQFERMD LKQQHDRAKP LTMLLEMRMF AEAVRFMEKL VANNNLSA*

Sequence ? help Back to Top

Protein Sequence Length: 2459 aa Download sequence Send to blast

MSAEVAHQGG FEADATAGGA APAPTSSGEA AQRLQQQAGA WVGGFLEDVQ ELGEGMAPLP  60
PELPHEAGSG GQDAGVLARP LRGKAQASQH DAESYAEAAV AAARRRTGAA DVASAAGAAD  120
GGQSGAPPSG QHAAVAEAEQ EQEQPAACTA AVLLPTPDMP LAEALAPHSA AAADQPLLEA  180
GRAASEQEAA AVEAVPAQPA VPGAEHEVED VTAAAQQQQY DTLLGMSGAA QQQLVPGVYD  240
PAVAQQQAFD ALVIGPLRTA QAAGGTGGAV APGATGAAGT TYTFEASGSG PAGRPPSQQA  300
AASGGRGRPG RPASQLAGAS NDAVASGMAS ALEQAQQEVE DQHPEQGVTE GHALPVVGVP  360
ATAAGEPVEQ SVQAPKHGGT KFRVRVPSNA RLGAAAAPPA APHGSRGVSE APPGSGKYKV  420
QARDVRIAGY QSEALAAAAH DHARIWWALR QQQPEGPGTA AQAASQDQVQ AAVLGLQGEL  480
NFPPVKFSSD AALLALLSGA TRQQLEEQLQ PFRLQQWEAA ARSAGQQQLQ AGVGSAAALN  540
QDNTTRFVGV LRITGSVKLQ AAITVDGTRE HLGAFDTPVE AAVVRDIGII WKQLHGLAGD  600
AMLNLPHSNL DKDAELVQEL RDAANPNALR AVLVRWVPKR LQDVVASLPG AEAGSQRAAG  660
TTLARVGSGA VHGSELPASP PPSAAGAAQG PPAAEDVGQP GAAHGAGALA CNGTSAGGGS  720
SGNSQQTSQQ QAGDGPEGGG GSSAGEGSED RNEEGDGDEE EQPGDSSDVS GSQLCSHCGD  780
DQCTGYQRHP SSGKLLCANC FSYLQRTGLD RPADVIQAYF ANRAAGMHAR TGRGNGHGSG  840
RGSGRDNSSS RRAAAGLDVV RGPGGSNRQA AAGRARQAAA RHPEDTVLSS DEGAAAADDE  900
SSEEESDLKE RRLRRQAQRH LDVQLQLRRQ PIAASAQGRV LPRRRNAAAG VAAAVAAAGA  960
SSSEEDEGRP ATSSDYEQQE ASESEEEFAE SEAEPVQQQQ HAAASAGGDG ASAFEWEDAG  1020
HSRMLKTINV AEAEARAFIF PESTWDDLAG GSNREVLVRH AYSGEEWRGY LSGTTLRLPG  1080
LFGKLELSAG SRLQLRVAAP KRELPLVECT LLMPEAVAAI GRKCPVCGTT SSTQWRKPPG  1140
EAGHILCDDC GKRVWQQRAE SLQQQQQQPL QPQQQPLHEQ PRDQPAVGTA AVRQCTHCGF  1200
LQPGPAGRQY YWRRHPTTRE QLCAPCGRYA DKHGGELPEL LEEEEQEDSE EQQDEDSEED  1260
EEEHPQRQPP QRQCLQCGST SKGSAKWAGW HRHPASGEEW LCHPCYRKVH NAIKRQQRQA  1320
EKQAQQEVES EVEPDEEEQS EEEEEEAAIA AAVKQCTHCG SLRPGPPGTK YSWRRHPTSK  1380
EQLCGRCWGH AHRHGGELPA LSDAEGEQEQ SEEEEEEQPP QQPQERQCLQ CASPTKGSGR  1440
WATWHRHPAT GEEWLCQPCF NKARAAIKRQ QRQPEKHPQE VESEEEEAQS EEEEEEEQLQ  1500
QQPPQRQCLQ CGSTSKGSSK SAGWHRHPAT GEEWLCQPCF NKARTAAMRQ QRQPEKHPQE  1560
VESEEEEAQS EEEEEEEQLQ QQPQQRQCLQ CGSTSKGSTK SAGWHRHPAT GEEWLCHPCY  1620
RKVHNAIKRQ QRQAEKQAQQ EEKSEVEPEG EEQSEEEEAA VAAAVKQCTH CGSLRPGPPG  1680
TSYSWRWHPT SKEQLCGPCC GYSDRHGGEL PVVAWKEAAA AATNQPKKKQ QGKRKQHGRQ  1740
PPAAPAVDEE PPVSPRQHKQ QRVADAATAV GAEGQSDAGA AGEQRLCSHC GADHAGPTPT  1800
YPWRKHATTG ARLCKDCWDF SRKHYGFLPE LPQPAEPPQP SQPEGQEEQP AAGKGRQRSG  1860
TRWASGQEQG DAAAGDAEAL QAPVLLSLPG RRVTRHQQHQ QEEQQHGAVE VEAQAATAAG  1920
QASRRRRRLS EVEGEAAAEE QQQPPSASEH KRGRRQLVQA EQEQTALLGS MHKRGRRQQE  1980
EQAEDTAEAE AGEKQKEQAA EPAAKRRRGK QQEVPEPPAA AVAAAPAEPV GASQASDSAG  2040
ATGRGGGECR WVNADSTALE VEVNGTCILS ETLVLPAAMA AKLTGLQAGG HLRLRDARTA  2100
NNRTAWNASL SDGRIEGKKL FSKLDVQEGD RLLLHRQAPA AAARAPGGRP PLLVAAKVAR  2160
EGPGEQALQQ ALAMAAAAAG VSAPAAVPGS GGEGAEPADG AGAGAPAAQQ EQPPPQDVAP  2220
AAAAAEAAMD ADEARQEQEP GAAAAEAQQQ AGEAEPAAAA VAAVQPAPAE GAGPRPELEG  2280
SMAGSGGGQQ EQAQHPGVAL RMFKQAREEP ARSSAPRGAG GNAAAGQRGP AAGGPPPAEP  2340
AGEPPAAAAA PAEPPPAAAG APPAVGVAAP GGSPASGASK EANDVLERLI LVLGSDAAAR  2400
QAGLTIDLIT DHQAQFERMD LKQQHDRAKP LTMLLEMRMF AEAVRFMEKL VANNNLSA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005849601.1	0.0	hypothetical protein CHLNCDRAFT_143055
TrEMBL	E1Z9D6	0.0	E1Z9D6_CHLVA; Uncharacterized protein
STRING	XP_005849601.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17357168

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]