PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_5_00352

Common Name

CHLNCDRAFT_143023

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

C3H

Protein Properties

Length: 1409aa MW: 146207 Da PI: 6.589

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_5_00352	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	82	105	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +C f++tGtC+ G C++aH+ IGS.gm_5_00352 82 TQPCIEFLQTGTCPAGHGCRRAHS 105 89*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	8.63E-5	79	110	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.206	79	107	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-5	81	111	IPR000571	Zinc finger, CCCH-type
Pfam	PF03222	4.6E-36	1077	1405	IPR018227	Tryptophan/tyrosine permease

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003333	Biological Process	amino acid transmembrane transport
GO:0009706	Cellular Component	chloroplast inner membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1409 aa Download sequence Send to blast
MAEWYARQGY DAGKYKCLLC PLSAQNACVH STHSSACFYA HTALELRHDV STWADRWRLQ 60 QTVRVIHELP EGSTWADMEH RTQPCIEFLQ TGTCPAGHGC RRAHSLAQLQ PRPVPAPQLR 120 AALEQQGWAL PPALGELGEQ QQELPLPLPA AQQYGAWQAA CEVSATAAMA ADAGRRALAL 180 AAKHPAHPAP ASGSPAAGAK REAAQEPAGL ATTPKRQRSD GLGCALAHPA AQCNGAAAET 240 APPAASDAAQ AAPVEPSGTR QSSPGTREGH STREDGQQLP QQPPQPPQEH GSAQQPASPL 300 KQGAQPASPR QPPSPSLVGR VSNLEARLGL AHSELQQRGE ALLNLQQDLQ ASWGHAAQAA 360 RGRLQAELVA LKEQHAVLQG DYDAKDRDWA ELQGRTQQAE AAEAAADARA AGAEREREAA 420 AREVQRMQAR LRVVEEATRA VQAGARQALG AAEPSRLRGE LALALKEQEA LERQVAQRDA 480 SLAAAAGELA RREEEAERAR REAAAAAQQA QQAVQELETA AQEARQLAAV RGEAVGVLQE 540 QLATANMRCQ QLESSAARQQ AAAGVPAAPA PAAALSAHQQ QVQQAASPAP PPGSIALGSS 600 GSGGGDATGS NLEGLQREVA KRDKKLALMT AALRRDTEKH KRQVAELQAQ LAAATAAAGR 660 PSTSASTPQG SALQQDKRQH PEVATTGGVA PPPQPAAWQE LQEPAGAAEA AATASQQEQA 720 TLQQHVAKLE AAAAGAVAVH HQGSQQVGAL LAKLAAADRA AASAEAAAAE ACGGADKLTL 780 QLAAKEQELQ EARRAAAPAQ QQVEELARQL EAHTAAAEEQ RQYAETAEAD AGELRQRLAK 840 AEERLKARRA LPGAAQGALR QRPPLTLHKR CLPGHLQNAN DDKKYLREEL AAARRELDEL 900 AVLRGALPGP VPPGFDHLPP LPPSPPPPPP PAPGLPVGWL PPALWDHVEH VARATRGAVL 960 PEHFERPRVQ ELLLSMSEPQ QRGFLDLLVR EGARRPVSDP VRFIVAWAQD FLARRRLTRR 1020 VGLRPASGGG GGGGDGGGAE APLSLDDEAY SEAARRIGFR LFSNLHPETL KHEPGTVWGA 1080 AALVTGTTVG AGILALPAVT APSGFIASSA ALSAFCAFSI REPGTMELVT GLLVAEVNIN 1140 TLCELGAGRG VSLSSMARRT LGDGGAAVVS ATYLLIHYAL LVAYISKAGE TLDRVAGLPV 1200 PLGDAAFGAA VGGLCFAARP ATLNRVNTFL VGVFVASFLG LVSVAAVDMR PQQLAVAHWE 1260 AVPDALPVVA LAYVYQNVVP VITTSLEGDV AKIRQAVIVG VAVPWLMFEC WLAAVLGSAT 1320 ASSSSIGGGG GPGDAGLAAA AAGAADAAAA AAAAAAAAAD PLAQLRDAGG PLVTPLIDSF 1380 TFLAVATSAI GFILGLSDFM ADALQARP*

Sequence ? help Back to Top

Protein Sequence Length: 1409 aa Download sequence Send to blast

MAEWYARQGY DAGKYKCLLC PLSAQNACVH STHSSACFYA HTALELRHDV STWADRWRLQ  60
QTVRVIHELP EGSTWADMEH RTQPCIEFLQ TGTCPAGHGC RRAHSLAQLQ PRPVPAPQLR  120
AALEQQGWAL PPALGELGEQ QQELPLPLPA AQQYGAWQAA CEVSATAAMA ADAGRRALAL  180
AAKHPAHPAP ASGSPAAGAK REAAQEPAGL ATTPKRQRSD GLGCALAHPA AQCNGAAAET  240
APPAASDAAQ AAPVEPSGTR QSSPGTREGH STREDGQQLP QQPPQPPQEH GSAQQPASPL  300
KQGAQPASPR QPPSPSLVGR VSNLEARLGL AHSELQQRGE ALLNLQQDLQ ASWGHAAQAA  360
RGRLQAELVA LKEQHAVLQG DYDAKDRDWA ELQGRTQQAE AAEAAADARA AGAEREREAA  420
AREVQRMQAR LRVVEEATRA VQAGARQALG AAEPSRLRGE LALALKEQEA LERQVAQRDA  480
SLAAAAGELA RREEEAERAR REAAAAAQQA QQAVQELETA AQEARQLAAV RGEAVGVLQE  540
QLATANMRCQ QLESSAARQQ AAAGVPAAPA PAAALSAHQQ QVQQAASPAP PPGSIALGSS  600
GSGGGDATGS NLEGLQREVA KRDKKLALMT AALRRDTEKH KRQVAELQAQ LAAATAAAGR  660
PSTSASTPQG SALQQDKRQH PEVATTGGVA PPPQPAAWQE LQEPAGAAEA AATASQQEQA  720
TLQQHVAKLE AAAAGAVAVH HQGSQQVGAL LAKLAAADRA AASAEAAAAE ACGGADKLTL  780
QLAAKEQELQ EARRAAAPAQ QQVEELARQL EAHTAAAEEQ RQYAETAEAD AGELRQRLAK  840
AEERLKARRA LPGAAQGALR QRPPLTLHKR CLPGHLQNAN DDKKYLREEL AAARRELDEL  900
AVLRGALPGP VPPGFDHLPP LPPSPPPPPP PAPGLPVGWL PPALWDHVEH VARATRGAVL  960
PEHFERPRVQ ELLLSMSEPQ QRGFLDLLVR EGARRPVSDP VRFIVAWAQD FLARRRLTRR  1020
VGLRPASGGG GGGGDGGGAE APLSLDDEAY SEAARRIGFR LFSNLHPETL KHEPGTVWGA  1080
AALVTGTTVG AGILALPAVT APSGFIASSA ALSAFCAFSI REPGTMELVT GLLVAEVNIN  1140
TLCELGAGRG VSLSSMARRT LGDGGAAVVS ATYLLIHYAL LVAYISKAGE TLDRVAGLPV  1200
PLGDAAFGAA VGGLCFAARP ATLNRVNTFL VGVFVASFLG LVSVAAVDMR PQQLAVAHWE  1260
AVPDALPVVA LAYVYQNVVP VITTSLEGDV AKIRQAVIVG VAVPWLMFEC WLAAVLGSAT  1320
ASSSSIGGGG GPGDAGLAAA AAGAADAAAA AAAAAAAAAD PLAQLRDAGG PLVTPLIDSF  1380
TFLAVATSAI GFILGLSDFM ADALQARP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005849850.1	0.0	hypothetical protein CHLNCDRAFT_143023
TrEMBL	E1Z9B5	0.0	E1Z9B5_CHLVA; Uncharacterized protein
STRING	XP_005849850.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17356864

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]