PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_5_00352 | ||||||||
Common Name | CHLNCDRAFT_143023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | C3H | ||||||||
Protein Properties | Length: 1409aa MW: 146207 Da PI: 6.589 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 82 | 105 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +C f++tGtC+ G C++aH+ IGS.gm_5_00352 82 TQPCIEFLQTGTCPAGHGCRRAHS 105 89*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.63E-5 | 79 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.206 | 79 | 107 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-5 | 81 | 111 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF03222 | 4.6E-36 | 1077 | 1405 | IPR018227 | Tryptophan/tyrosine permease |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003333 | Biological Process | amino acid transmembrane transport | ||||
GO:0009706 | Cellular Component | chloroplast inner membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1409 aa Download sequence Send to blast |
MAEWYARQGY DAGKYKCLLC PLSAQNACVH STHSSACFYA HTALELRHDV STWADRWRLQ 60 QTVRVIHELP EGSTWADMEH RTQPCIEFLQ TGTCPAGHGC RRAHSLAQLQ PRPVPAPQLR 120 AALEQQGWAL PPALGELGEQ QQELPLPLPA AQQYGAWQAA CEVSATAAMA ADAGRRALAL 180 AAKHPAHPAP ASGSPAAGAK REAAQEPAGL ATTPKRQRSD GLGCALAHPA AQCNGAAAET 240 APPAASDAAQ AAPVEPSGTR QSSPGTREGH STREDGQQLP QQPPQPPQEH GSAQQPASPL 300 KQGAQPASPR QPPSPSLVGR VSNLEARLGL AHSELQQRGE ALLNLQQDLQ ASWGHAAQAA 360 RGRLQAELVA LKEQHAVLQG DYDAKDRDWA ELQGRTQQAE AAEAAADARA AGAEREREAA 420 AREVQRMQAR LRVVEEATRA VQAGARQALG AAEPSRLRGE LALALKEQEA LERQVAQRDA 480 SLAAAAGELA RREEEAERAR REAAAAAQQA QQAVQELETA AQEARQLAAV RGEAVGVLQE 540 QLATANMRCQ QLESSAARQQ AAAGVPAAPA PAAALSAHQQ QVQQAASPAP PPGSIALGSS 600 GSGGGDATGS NLEGLQREVA KRDKKLALMT AALRRDTEKH KRQVAELQAQ LAAATAAAGR 660 PSTSASTPQG SALQQDKRQH PEVATTGGVA PPPQPAAWQE LQEPAGAAEA AATASQQEQA 720 TLQQHVAKLE AAAAGAVAVH HQGSQQVGAL LAKLAAADRA AASAEAAAAE ACGGADKLTL 780 QLAAKEQELQ EARRAAAPAQ QQVEELARQL EAHTAAAEEQ RQYAETAEAD AGELRQRLAK 840 AEERLKARRA LPGAAQGALR QRPPLTLHKR CLPGHLQNAN DDKKYLREEL AAARRELDEL 900 AVLRGALPGP VPPGFDHLPP LPPSPPPPPP PAPGLPVGWL PPALWDHVEH VARATRGAVL 960 PEHFERPRVQ ELLLSMSEPQ QRGFLDLLVR EGARRPVSDP VRFIVAWAQD FLARRRLTRR 1020 VGLRPASGGG GGGGDGGGAE APLSLDDEAY SEAARRIGFR LFSNLHPETL KHEPGTVWGA 1080 AALVTGTTVG AGILALPAVT APSGFIASSA ALSAFCAFSI REPGTMELVT GLLVAEVNIN 1140 TLCELGAGRG VSLSSMARRT LGDGGAAVVS ATYLLIHYAL LVAYISKAGE TLDRVAGLPV 1200 PLGDAAFGAA VGGLCFAARP ATLNRVNTFL VGVFVASFLG LVSVAAVDMR PQQLAVAHWE 1260 AVPDALPVVA LAYVYQNVVP VITTSLEGDV AKIRQAVIVG VAVPWLMFEC WLAAVLGSAT 1320 ASSSSIGGGG GPGDAGLAAA AAGAADAAAA AAAAAAAAAD PLAQLRDAGG PLVTPLIDSF 1380 TFLAVATSAI GFILGLSDFM ADALQARP* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005849850.1 | 0.0 | hypothetical protein CHLNCDRAFT_143023 | ||||
TrEMBL | E1Z9B5 | 0.0 | E1Z9B5_CHLVA; Uncharacterized protein | ||||
STRING | XP_005849850.1 | 0.0 | (Chlorella variabilis) |
Link Out ? help Back to Top | |
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Entrez Gene | 17356864 |
Publications ? help Back to Top | |||
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