PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_5_00298
Common NameCHLNCDRAFT_142969
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family GATA
Protein Properties Length: 465aa    MW: 47458.6 Da    PI: 8.9213
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_5_00298genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.81.7e-14242275134
            GATA   1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkg 34 
                     CsnC+tt+Tp WR++   g + LCnaCGly +k+ 
  IGS.gm_5_00298 242 CSNCHTTSTPFWRKDRfTGLP-LCNACGLYAAKND 275
                     *********************.********99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-14236287IPR000679Zinc finger, GATA-type
PROSITE profilePS5011417.542236290IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.47E-14237286No hitNo description
Gene3DG3DSA:3.30.50.104.7E-18238287IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.98E-19241287No hitNo description
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
PfamPF003203.3E-11242275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSILARLPSS GAATGQQASA PSAIRAVQPS AFAPFQQPPQ PEQQLYQIAL GGLQNALDQA  60
QAAFPTLGAN LPPLGASQAA GAALRLLQAA QSHNVQPSLQ QLPLGSDLPA ATAAVSSAAA  120
AAVAAAGWPA AAVPAPPPAR PAAAPPPGGV KLVAAPPPQQ LLSAAGIFGP TAGAESPRLP  180
DRSPMPYRAA ASAAAAPSAG YGGGQDWGPA DAGTLSDGSV EHQRKRARRD DTGSGGGNGK  240
VCSNCHTTST PFWRKDRFTG LPLCNACGLY AAKNDHPRPV KLWREGQPTG GASVPILPPP  300
QLQQRAASLQ QPQHQQATHQ AYVPTAQQQQ QTPSQNQQPP QQPLQSQEDS PTVVAATAAV  360
VQHAATQLQD VQRATSGSAS PQQQQQQQQQ RSPPPQDLQL RPPPPAEEEQ SPPAQQQRQA  420
GGSPPAQQAA ADSGRQQVPM SSSDAYTQAA VALLASVASL HASH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222228QRKRARR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849568.10.0hypothetical protein CHLNCDRAFT_142969
TrEMBLE1Z9690.0E1Z969_CHLVA; Uncharacterized protein
STRINGXP_005849568.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41981111
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]