PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_5_00281
Common NameCHLNCDRAFT_142952
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB_related
Protein Properties Length: 755aa    MW: 79468.1 Da    PI: 5.2165
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_5_00281genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.4e-10266299338
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      +WT eE+ l+++a +++G + Wk+ a+++g +R   
   IGS.gm_5_00281 266 SWTDEEERLFLEALQLYGRD-WKRCAEHVG-TRDHR 299
                      7*****************77.*********.98655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.647259313IPR017930Myb domain
SuperFamilySSF466896.36E-10260311IPR009057Homeodomain-like
SMARTSM007174.1E-7263311IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.7E-9263311IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-6263297IPR009057Homeodomain-like
CDDcd001675.87E-7266296No hitNo description
PfamPF002491.4E-7266296IPR001005SANT/Myb domain
SuperFamilySSF1027129.81E-16489596No hitNo description
PfamPF013988.5E-8490596IPR000555JAB1/MPN/MOV34 metalloenzyme domain
Gene3DG3DSA:3.40.140.101.2E-13491616No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MATDDDAEIA RLLAVENPEQ YYEYDFGNEE DDPDDGDDPD YGAGKKGGRK GKKKKAAEAG  60
GLASAATGFD PATTAAAAAY ALPAVTATGP AAAGAAPATA EAQHGMMVNG VTAMPGAALP  120
GVMPGASMQI MLQQQALAAA LAAGGGAGMT GLQIALPPGV SLEQASMMGL PIMALPVQLP  180
QAGGGIADAP GSTATAATLP MAPGSTAAVL PRVGGVGGMP AAAAAVAKPA AGAGAGGGKS  240
SDGDEFTATG RRKRKDTGKQ RQQSRSWTDE EERLFLEALQ LYGRDWKRCA EHVGTRDHRA  300
FTSHAQKHFI KLLLRGEEVP PKVAETGRGY TLSGKSLDPN SAAARAYGLK PDLFTRIAGT  360
GKLVVGVHVT TLDMSDGPPP QIQRSRGGKS PLGGGGGGGG KRQRRGKSSG ERFGSEYETE  420
EEDEDAFLAS AIQGEVAEAA EPTEYVRNRP RRQVGRRMQL GETTESTDLT HLDSFVGPPG  480
TGAPMAQPFQ VTIDRQAVLV MDFHAHLSRC EIIGLLGGAF DAERRMLEIR EAYPCRRAEG  540
QASGTSVELC AESQVEVSGL MEERGQVPVG WYHSHPVFEP RPSQKDNENQ RNYQALCRDA  600
ATGLEPWVGA IVGPYDQGLE SASSQMQLWV VKMHNGELRP FSIRALTTGG DTMPTQHTEQ  660
AVAMALDQLD GDVGRVDLSE QWRPYSRLSM QQPEGPPLTK IQKLRESLAA HLPAAEHPAE  720
QQAAAMPKLD DPEGYDLPSR QQFSMAVPGM LKQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255RRKRKD
2386394GGKSPLGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849821.10.0expressed protein
TrEMBLE1Z9550.0E1Z955_CHLVA; Expressed protein
STRINGXP_005849821.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP229888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-11MYB_related family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]