PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_4_00452 | ||||||||
Common Name | CHLNCDRAFT_142311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | C3H | ||||||||
Protein Properties | Length: 248aa MW: 26065.1 Da PI: 5.2819 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.1e-07 | 46 | 61 | 12 | 27 |
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 G C++G+rC+FaHg+ IGS.gm_4_00452 46 DGNCRFGARCSFAHGE 61 599***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.695 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-5 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-7 | 45 | 65 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-5 | 46 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.85E-20 | 161 | 231 | No hit | No description |
PROSITE profile | PS51698 | 17.348 | 169 | 228 | IPR003613 | U box domain |
Gene3D | G3DSA:3.30.40.10 | 4.8E-22 | 169 | 236 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF04564 | 1.1E-15 | 170 | 232 | IPR003613 | U box domain |
SMART | SM00504 | 1.3E-17 | 173 | 235 | IPR003613 | U box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0004842 | Molecular Function | ubiquitin-protein transferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MQANSTSYSL LETLGEGQSV DEENHAPDVG DQLTLDDKKF TRMCEDGNCR FGARCSFAHG 60 ERELREHVHD EAAVLAELAS KGQRPMYGPG PNSPIPPAAA PPRQYSVGAG SNRGGGVGSP 120 PARRLPAPPP PPPSASVAVG AADVGAVPMS SARLAQYLAA AQLGDDDAHV PEAFICPITH 180 VVLQDPVVAA DGFTYERDAI QSWLTKNRTS PMTGEQLADA HLVPNHTLMA AMRQVLGDGA 240 CSLRRQQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005850410.1 | 0.0 | hypothetical protein CHLNCDRAFT_142311 | ||||
TrEMBL | E1Z898 | 0.0 | E1Z898_CHLVA; Uncharacterized protein | ||||
STRING | XP_005850410.1 | 0.0 | (Chlorella variabilis) |
Link Out ? help Back to Top | |
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Entrez Gene | 17357769 |
Publications ? help Back to Top | |||
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