PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_4_00378

Common Name

CHLNCDRAFT_142237

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Nin-like

Protein Properties

Length: 426aa MW: 44578.4 Da PI: 7.3154

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_4_00378	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	55.7	9.7e-18	264	300	11	47
RWP-RK 11 skyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 + yF++++k+AA +Lgv++T+LK+ CRq G+ RWP+R IGS.gm_4_00378 264 NGYFDMTLKEAADQLGVGVTTLKKLCRQSGLGRWPYR 300 569*********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.903	241	325	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-15	264	301	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MLVRNTMSGP WPDAPPPPAT STPLAAKLGA SLHTTPASIP ALPLMSPGAT PSLGIGFGGL 60 ASCGSGQSLD HVMLVATDPM SRHFIHLNMV DVEVDHEAMD ALMEVEGQAR GRSAQLHGTP 120 RLDLAACLGA ALSPWPVPLL HPLSPCLEEV PGSTGSVAMQ QAAASSSAVA AAAAGAQPQP 180 GGGAGTTPCR PSSAASSETA AICTLSSRRS LSQQLSDSTQ APQPRNKTEG PGEVSGGGSQ 240 AEGSAGNKGE AQPGGLTVSF LDDNGYFDMT LKEAADQLGV GVTTLKKLCR QSGLGRWPYR 300 ARCSLRNLRD KMREYFSCAP AEERDAADAL MEREFRRLAH MNVGAIDDAF KQFRQAMFKL 360 EFKARQQLDA GRAAAAGSNP RKRLHPAEPH KEAELSGVFH GDAAFRQQAM LHLRRLLNAC 420 SDGTY*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MLVRNTMSGP WPDAPPPPAT STPLAAKLGA SLHTTPASIP ALPLMSPGAT PSLGIGFGGL  60
ASCGSGQSLD HVMLVATDPM SRHFIHLNMV DVEVDHEAMD ALMEVEGQAR GRSAQLHGTP  120
RLDLAACLGA ALSPWPVPLL HPLSPCLEEV PGSTGSVAMQ QAAASSSAVA AAAAGAQPQP  180
GGGAGTTPCR PSSAASSETA AICTLSSRRS LSQQLSDSTQ APQPRNKTEG PGEVSGGGSQ  240
AEGSAGNKGE AQPGGLTVSF LDDNGYFDMT LKEAADQLGV GVTTLKKLCR QSGLGRWPYR  300
ARCSLRNLRD KMREYFSCAP AEERDAADAL MEREFRRLAH MNVGAIDDAF KQFRQAMFKL  360
EFKARQQLDA GRAAAAGSNP RKRLHPAEPH KEAELSGVFH GDAAFRQQAM LHLRRLLNAC  420
SDGTY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005850131.1	0.0	hypothetical protein CHLNCDRAFT_142237
TrEMBL	E1Z836	0.0	E1Z836_CHLVA; Uncharacterized protein
STRING	XP_005850131.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-11	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17357420

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]