PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_4_00307
Common NameCHLNCDRAFT_142166
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family CAMTA
Protein Properties Length: 729aa    MW: 77011.2 Da    PI: 6.5143
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_4_00307genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1141.52.5e-44131273115
            CG-1   3 kekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     k ++ wlkn e++++Le f+   l+   e++ rp  g+l+L++r++ r+fr+DG++w+kk dgkt+rE+hekLKvg+ e+l+cyYah++++  +q
  IGS.gm_4_00307  13 KARTSWLKNAEVLELLEGFAGAGLAVcqEPPVRPAGGQLFLFDRRICRFFRRDGHTWRKKPDGKTIRETHEKLKVGNAETLNCYYAHADQEDGLQ 107
                     34899************88876554444******************************************************************* PP

            CG-1  96 rrcywlLeeelekivlvhyl 115
                     rrcyw L+ e+e+ivlvhyl
  IGS.gm_4_00307 108 RRCYWQLDPEKEHIVLVHYL 127
                     *******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143759.8937135IPR005559CG-1 DNA-binding domain
SMARTSM010763.2E-4810130IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4314127IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDIAASVAAV VDKARTSWLK NAEVLELLEG FAGAGLAVCQ EPPVRPAGGQ LFLFDRRICR  60
FFRRDGHTWR KKPDGKTIRE THEKLKVGNA ETLNCYYAHA DQEDGLQRRC YWQLDPEKEH  120
IVLVHYLCCA SSRAGTQRAA SAELAGDVAA GCTPRPQRAS RQQHRRAYSP PPGAASAAGG  180
RRRGASQTKL SPLATAASLE SDLVSQGSGE TELPLVQGMT LEAAAALPSL AQQYAMQQQA  240
AAVVQQQMQL QQLLQSGGSG GSGSGSGEFD PFALPAVPEH HRPLPGVLYT DQRVATQLSA  300
AAAAQQASVH SPLLPPRPLM KQESFQADQH KALFREMSLG IQREATEEGG YFLGSPGEPD  360
PLGTDKAAAS TPGPDLAALL ASPPHGGHRR SFSRQGSGLS RLISKNWEND VMEMMLPDVD  420
SDISAYPMER VVVEVAQRPS SPGSRLFDQA GIAFFGSAHS AATAVQHALE PSPLGLAPGG  480
ESPLEFAAGE AHARAQRPRL ARVSGAGMPR SGSHPHLAHL AKRPGGAGAE AGSEEERRKE  540
RVDAAAVAAA YAAQEHRDEK LAAVRSQRAA SSTEAEDTLE MIDVPENLQR LSSFLHRGPA  600
SGARLTLGRE LAAAEASAVA DLELEARSLL KHMSIDEVDA VAAVRDAAKE LEVMPTIYAA  660
PSSELEAASG APSHRDSQSE ELGSRGHSAT SLLDGLQVAT SGVAGQPLDP IAQQLQAAMA  720
QHAARQAR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005850100.10.0hypothetical protein CHLNCDRAFT_142166
TrEMBLE1Z7X70.0E1Z7X7_CHLVA; Uncharacterized protein
STRINGXP_005850100.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP513289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.25e-26Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]