PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_4_00240
Common NameCHLNCDRAFT_142099
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family ERF
Protein Properties Length: 317aa    MW: 33452.8 Da    PI: 9.2456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_4_00240genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.84.6e-07186227150
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 
                     s+y+GV++   + rW+A+ r+      r +r ++     +e+Aa+a+++++
  IGS.gm_4_00240 186 SKYRGVHQTFPTRRWEAQFRCG-----RgQRAWVR----EEQAARAYDKMM 227
                     89****************8883.....34999999....6********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-4187235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEAPQDPQQP PPASQQAGEA LTTPSPSRKL TSASVRADLV AHIRGLAEAC GAVPDICKRR  60
APGEPDLAVG AQVADWEQLR RRKEFDLLQA YPAAGLHPST FVPTSQAVPA LPDSAAAAVT  120
AAAAAAAALP VPVPAMVPAS GSVPLVPAMP APAAMPAERQ AGGGVRQVGK ITKANKQKSG  180
GRTFTSKYRG VHQTFPTRRW EAQFRCGRGQ RAWVREEQAA RAYDKMMLWC ELHNATGVKG  240
GITNFDASSY EASVFAEVAF LQQCTQASGA GALADDDLVQ MLRSEGRRQA AQRMLKQKRD  300
GAAAYARDNA SDSENE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005850323.10.0hypothetical protein CHLNCDRAFT_142099
TrEMBLE1Z7S10.0E1Z7S1_CHLVA; Uncharacterized protein
STRINGXP_005850323.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP27461414
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]