PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_4_00164

Common Name

CHLNCDRAFT_142023

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

HB-other

Protein Properties

Length: 1568aa MW: 158858 Da PI: 5.0816

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_4_00164	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.9	5.3e-11	136	185	7	56
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 f++eqle+L++lF++n y +++++ LA++lg++ qV+ WF +R k + IGS.gm_4_00164 136 FSEEQLERLQALFAQNEYAGTAAKTALATELGVELVQVSKWFEKQRKKVR 185 99********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.5E-8	123	191	IPR001356	Homeobox domain
CDD	cd00086	3.81E-9	124	185	No hit	No description
PROSITE profile	PS50071	13.362	127	187	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-9	135	187	IPR009057	Homeodomain-like
Pfam	PF00046	1.6E-8	136	185	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.3E-11	136	189	IPR009057	Homeodomain-like
Pfam	PF12253	2.1E-14	884	956	IPR022043	Chromatin assembly factor 1 subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1568 aa Download sequence Send to blast
MFRAITKKSA NGHGADSKGT LTALWSKAGS KADNKEAPLS DAAPEGAAEP PSAQFTPAAA 60 SRASDEAAAA GQAAPPTTGG DVAIGAAPEP SPEPIAVAAQ VAAEVQPPAN PDAQPSKGTT 120 AEKKRKRSSA AANSGFSEEQ LERLQALFAQ NEYAGTAAKT ALATELGVEL VQVSKWFEKQ 180 RKKVREETGA PPKRGRPKSG AASGSKPAPA AAAPDKVEPA AAAAGQEGGE AAAAAADAVE 240 AGEGQEVEAM DVDGAAEDDQ AAAQQQQTPS APPAPVAAPA AALEPAEAMA ADEAGVEPAA 300 AAAGAAPATE ITPAAATRPA AEAAPATQQA VSAERPAAAP AAASSPPTGA AAAPAKTPAS 360 VPQQYSLSTE DKAKLVADLE AEAEQLRRQG LAAPLQVLPA DPPAERQPFS DARLAAAVAA 420 QRAPLSQLAA AALLLFTAPD GEAPVEEAVL RSRIVDLAAR KSFAPKERDG GTGMADALED 480 GSAAHLWQWE LRDHKACAAA SLLPLTAACC ASLWYPCSSP NLPASPSNPL CWISVLPKEL 540 RTAAQQTKKR AARVQERLSA VCAALRLLGP HQQGKASAKL AKALDALKKA KTLAQVEEEQ 600 QAEREAATAK EAAKKQQSAG KTGMSAEEKA RLKAEKEAAK EAEKERVKME KEAEKERLKA 660 EKEAEKERAK AEKEAEREKA KAEREAEKER KHKEAEEAKL AKKTGFKDAT VLKKTSNKFL 720 SFFQAKATPG GTPGRADASA VTPVQPGASS QQQGGASQLG GGGSQQQQGA EGTATGKREK 780 GYCELFLKPE GANLRSLPPQ PSAAERMDAA AGQPFAFEAA QAEWQQLLQG MKRRRREAAA 840 QPRPLGLPPT WARKSNAVEL AQQHLDKLQE SGADLAATRT WRRKLIFFPA DSKRPAFYGS 900 CTPSPAVGPR SYLGRDEALD YDAMSDLEWV EEPEDGCSLS DVEEEESEMG GGEEEEEHDS 960 FICEDGYLSE DEGVRVEDLE GDDMQVDGEE GLPEGAAAAA GIDPQRLLSM QQLEVQMERA 1020 RRAGKPLIIS RLPTRAASGN QPNGAFIQAR TPQLGDPSLL GALAAEVLLP GLRLTLPEDL 1080 AAEPASGAAG APATATKDAS PAGASLGRWP ACHGARAGPG LHATAGGGAT GDAAKPSGRG 1140 RRPATRPDDL LPDLLRMVQA APRNNKSKIA EAFVQAHAER AVTKKWVGDM LKQHADWRGT 1200 VQGYSLKPAA LHLVDPLAGA AAAAAALGAA PTLAAAAAAA PAAAVAQPGP RPVAAAPAGD 1260 GALGRAGAAA AAEAEEAGQA PQDAGGAAAA EPTPAGIKPA APGIARFFKK GAAAAATPAV 1320 PSALRPNAPP SDLKAPGRLV TTTAAGAAAE AATLAVPECV SGTADPFWRC LLQHIEGADG 1380 APGQQPQFLA AFQPAVLARL AAGMPAGVIA ALVAGVAAAA TPAATRAAYL RCLEAAVQAL 1440 AAMEAEAAGD NLSASQQVWQ PRGAPVAASL AELCREPQLL SGLQACLEAA TAAGSGGGTD 1500 APSSSGSGAA AVADAAQAAA ALAAALLASE AARAALATAD PAAAAGGGGG PQEQLAALVA 1560 AARELAA*

Sequence ? help Back to Top

Protein Sequence Length: 1568 aa Download sequence Send to blast

MFRAITKKSA NGHGADSKGT LTALWSKAGS KADNKEAPLS DAAPEGAAEP PSAQFTPAAA  60
SRASDEAAAA GQAAPPTTGG DVAIGAAPEP SPEPIAVAAQ VAAEVQPPAN PDAQPSKGTT  120
AEKKRKRSSA AANSGFSEEQ LERLQALFAQ NEYAGTAAKT ALATELGVEL VQVSKWFEKQ  180
RKKVREETGA PPKRGRPKSG AASGSKPAPA AAAPDKVEPA AAAAGQEGGE AAAAAADAVE  240
AGEGQEVEAM DVDGAAEDDQ AAAQQQQTPS APPAPVAAPA AALEPAEAMA ADEAGVEPAA  300
AAAGAAPATE ITPAAATRPA AEAAPATQQA VSAERPAAAP AAASSPPTGA AAAPAKTPAS  360
VPQQYSLSTE DKAKLVADLE AEAEQLRRQG LAAPLQVLPA DPPAERQPFS DARLAAAVAA  420
QRAPLSQLAA AALLLFTAPD GEAPVEEAVL RSRIVDLAAR KSFAPKERDG GTGMADALED  480
GSAAHLWQWE LRDHKACAAA SLLPLTAACC ASLWYPCSSP NLPASPSNPL CWISVLPKEL  540
RTAAQQTKKR AARVQERLSA VCAALRLLGP HQQGKASAKL AKALDALKKA KTLAQVEEEQ  600
QAEREAATAK EAAKKQQSAG KTGMSAEEKA RLKAEKEAAK EAEKERVKME KEAEKERLKA  660
EKEAEKERAK AEKEAEREKA KAEREAEKER KHKEAEEAKL AKKTGFKDAT VLKKTSNKFL  720
SFFQAKATPG GTPGRADASA VTPVQPGASS QQQGGASQLG GGGSQQQQGA EGTATGKREK  780
GYCELFLKPE GANLRSLPPQ PSAAERMDAA AGQPFAFEAA QAEWQQLLQG MKRRRREAAA  840
QPRPLGLPPT WARKSNAVEL AQQHLDKLQE SGADLAATRT WRRKLIFFPA DSKRPAFYGS  900
CTPSPAVGPR SYLGRDEALD YDAMSDLEWV EEPEDGCSLS DVEEEESEMG GGEEEEEHDS  960
FICEDGYLSE DEGVRVEDLE GDDMQVDGEE GLPEGAAAAA GIDPQRLLSM QQLEVQMERA  1020
RRAGKPLIIS RLPTRAASGN QPNGAFIQAR TPQLGDPSLL GALAAEVLLP GLRLTLPEDL  1080
AAEPASGAAG APATATKDAS PAGASLGRWP ACHGARAGPG LHATAGGGAT GDAAKPSGRG  1140
RRPATRPDDL LPDLLRMVQA APRNNKSKIA EAFVQAHAER AVTKKWVGDM LKQHADWRGT  1200
VQGYSLKPAA LHLVDPLAGA AAAAAALGAA PTLAAAAAAA PAAAVAQPGP RPVAAAPAGD  1260
GALGRAGAAA AAEAEEAGQA PQDAGGAAAA EPTPAGIKPA APGIARFFKK GAAAAATPAV  1320
PSALRPNAPP SDLKAPGRLV TTTAAGAAAE AATLAVPECV SGTADPFWRC LLQHIEGADG  1380
APGQQPQFLA AFQPAVLARL AAGMPAGVIA ALVAGVAAAA TPAATRAAYL RCLEAAVQAL  1440
AAMEAEAAGD NLSASQQVWQ PRGAPVAASL AELCREPQLL SGLQACLEAA TAAGSGGGTD  1500
APSSSGSGAA AVADAAQAAA ALAAALLASE AARAALATAD PAAAAGGGGG PQEQLAALVA  1560
AARELAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	127	KKRKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005850036.1	0.0	hypothetical protein CHLNCDRAFT_142023
TrEMBL	E1Z7K3	0.0	E1Z7K3_CHLVA; Uncharacterized protein
STRING	XP_005850036.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4880	2	2

Link Out ? help Back to Top
Entrez Gene	17357413

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]