PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_3_00649

Common Name

CHLNCDRAFT_140910

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

C3H

Protein Properties

Length: 714aa MW: 75765.7 Da PI: 5.9012

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_3_00649	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	4e-06	9	30	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ fa G C GdrC+ aHg+ IGS.gm_3_00649 9 CPSFATLGSCTNGDRCRLAHGQ 30 ********************97 PP
2	zf-CCCH	31.4	3.3e-10	445	470	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt lCr++++ G C++G+rC++aHg+ IGS.gm_3_00649 445 YKTLLCRHYQA-GSCSHGNRCTYAHGE 470 9********.***********96 PP
3	zf-CCCH	31.9	2.3e-10	498	521	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+ Crf++ G+Ck+G+rC+F Hg IGS.gm_3_00649 498 KTVVCRFWQN-GYCKHGPRCTFLHG 521 9*******.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	18	No hit	No description
PROSITE profile	PS50103	13.497	3	31	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.019	3	30	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-5	9	32	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF57850	3.18E-15	260	325	No hit	No description
PROSITE profile	PS51698	16.066	261	350	IPR003613	U box domain
SMART	SM00504	7.8E-16	265	329	IPR003613	U box domain
Gene3D	G3DSA:3.30.40.10	1.1E-14	265	329	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF04564	1.0E-8	266	324	IPR003613	U box domain
Gene3D	G3DSA:4.10.1000.10	4.8E-15	440	476	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-8	442	474	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.8E-7	444	470	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.173	444	471	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-7	445	470	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-11	490	527	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-7	496	526	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-8	496	522	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.924	496	523	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.7E-8	498	521	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF57850	2.38E-15	632	700	No hit	No description
PROSITE profile	PS51698	14.217	633	713	IPR003613	U box domain
SMART	SM00504	5.9E-15	637	701	IPR003613	U box domain
Gene3D	G3DSA:3.30.40.10	7.3E-16	637	701	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF04564	3.5E-10	638	700	IPR003613	U box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016567	Biological Process	protein ubiquitination
GO:0004842	Molecular Function	ubiquitin-protein transferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MIRSSATQCP SFATLGSCTN GDRCRLAHGQ REAGRTGEMK GHGANTKSQE APAPRRVLRV 60 LRATRAVAAP AAPPRQLPPS PRHSPPRDEQ LFKIDLCRYF ASPGGCKPAA VAEIDPAEVA 120 ALLQGTAYLE GPATSIGSSA AAGSVAGAGF QALAPSPAPP PVLPPVLPAA WLLPPETRGG 180 PAPLPGNGAL IERPVRSLHA AAAVPPGQLV EQGGGAGSEA GSDSDSGGIS DSGSGSDSGS 240 GSGGGGSGSS IPAGLQVVLH RAFNSMLCPI TLEPFVDPVV AADGNIYERR AIEHWLYREG 300 NGTSPLTNES LVHKLLMPCG TMRRCMRDVV EFLTAMRQQA EEESAPPGFP MPMPLLPPPP 360 PPAEWAAGGN PAEEEAFQEY DEEEEYDDDE DYDEAEEYEA EEHPAAAAAS TSEGGRVLIV 420 QRPQAAASGP ATPPLNYDQQ PPPNYKTLLC RHYQAGSCSH GNRCTYAHGE HELRRPERPQ 480 GQYQKQGPGQ PARHPGEKTV VCRFWQNGYC KHGPRCTFLH GYPEQRQQYS QPQGQQYQQQ 540 RPAVPPPPRV LARPGQAPQE EAGQELMAVD PQELVSLLQG THLDHPNGHA GGQAPAPPPS 600 YSAAVAGRGG GGDASAASQA PPLSAEVRSV LQRRFRSLLC PVTLEPFVDP VVAADGNIYE 660 RRAIEDWLYR GAHDTSPLTN ERLPHKMVMP CGTMRRCVDE VAQFVTAMRQ QVL*

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MIRSSATQCP SFATLGSCTN GDRCRLAHGQ REAGRTGEMK GHGANTKSQE APAPRRVLRV  60
LRATRAVAAP AAPPRQLPPS PRHSPPRDEQ LFKIDLCRYF ASPGGCKPAA VAEIDPAEVA  120
ALLQGTAYLE GPATSIGSSA AAGSVAGAGF QALAPSPAPP PVLPPVLPAA WLLPPETRGG  180
PAPLPGNGAL IERPVRSLHA AAAVPPGQLV EQGGGAGSEA GSDSDSGGIS DSGSGSDSGS  240
GSGGGGSGSS IPAGLQVVLH RAFNSMLCPI TLEPFVDPVV AADGNIYERR AIEHWLYREG  300
NGTSPLTNES LVHKLLMPCG TMRRCMRDVV EFLTAMRQQA EEESAPPGFP MPMPLLPPPP  360
PPAEWAAGGN PAEEEAFQEY DEEEEYDDDE DYDEAEEYEA EEHPAAAAAS TSEGGRVLIV  420
QRPQAAASGP ATPPLNYDQQ PPPNYKTLLC RHYQAGSCSH GNRCTYAHGE HELRRPERPQ  480
GQYQKQGPGQ PARHPGEKTV VCRFWQNGYC KHGPRCTFLH GYPEQRQQYS QPQGQQYQQQ  540
RPAVPPPPRV LARPGQAPQE EAGQELMAVD PQELVSLLQG THLDHPNGHA GGQAPAPPPS  600
YSAAVAGRGG GGDASAASQA PPLSAEVRSV LQRRFRSLLC PVTLEPFVDP VVAADGNIYE  660
RRAIEDWLYR GAHDTSPLTN ERLPHKMVMP CGTMRRCVDE VAQFVTAMRQ QVL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005850753.1	0.0	hypothetical protein CHLNCDRAFT_140910
TrEMBL	E1Z6H9	0.0	E1Z6H9_CHLVA; Uncharacterized protein
STRING	XP_005850753.1	0.0	(Chlorella variabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	4e-10	C3H family protein

Link Out ? help Back to Top
Entrez Gene	17357933

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]