PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

IGS.gm_32_00112

Common Name

CHLNCDRAFT_141274

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 264aa MW: 28878.8 Da PI: 8.8648

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_32_00112	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	35.9	1.9e-11	12	71	18	76
HHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 18 hrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 + h++C h + p v+ ++g r+C qC++ h+++ef ++rsC+ L +r +++ IGS.gm_32_00112 12 RSTHRICPDHRRVPRVVaADGSVWRYCLQCTKAHTIDEFSGDRRSCQASLLLRRQRSKRE 71 567********98873678899**********************998887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.699	1	71	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.9E-13	7	70	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.9E-11	9	58	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.03E-10	12	71	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MACHRAQEED KRSTHRICPD HRRVPRVVAA DGSVWRYCLQ CTKAHTIDEF SGDRRSCQAS 60 LLLRRQRSKR EREAEDQDWS GSEGGVEKRQ RQQGSSGSKA RRQPATGTRQ AGPEQRPALE 120 PSRSVSPPHA GSPPPPPKVV VLYMPSQQQV PQAWPAQAVP QPSRVNLPAD DVSSLPEEEA 180 VLLKGLGALG QGPTSAELLC IARELGLLGS LDQQQQLLPA QLPWQPAAPA LAQPPHMPPA 240 QGVLLPPIWP ALHMPLPLQH WAW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	70	RRQRSKRE
2	64	69	RQRSKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843350.1	0.0	hypothetical protein CHLNCDRAFT_141274
TrEMBL	E1ZSH9	0.0	E1ZSH9_CHLVA; Uncharacterized protein
STRING	XP_005843350.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	2e-07	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Entrez Gene	17350698

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]