PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

IGS.gm_32_00096

Common Name

CHLNCDRAFT_141258

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 305aa MW: 33460.5 Da PI: 6.3644

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_32_00096	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	39.6	1.4e-12	4	61	21	77
TT--HHHHT-S-.EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 21 hkvCevhskapv.vlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 h++C h ++ + v+ +g+ rfC qC++ h+++ef ++rsC+ L +r+r +q IGS.gm_32_00096 4 HRICPEHRRSLHiVAEDGVVWRFCLQCAKLHTIDEFSGDRRSCQASLLLRRQRKRDRQ 61 9****9986615578999************************999888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.827	1	60	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-14	4	59	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.6E-11	4	47	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-11	4	62	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MPVHRICPEH RRSLHIVAED GVVWRFCLQC AKLHTIDEFS GDRRSCQASL LLRRQRKRDR 60 QLAELEDHEE ALRPSKHPSS HTAATTTSSG QASLQNSRRD ERCSQGSGGS VPLQQQPSWP 120 SLEQGQWPCG AAGQHQRQLS APLAPSSSLL SAGSGSTGTG WQAVSPQHRM PCHGDGSQQL 180 LAPTQPIIVL QCSLPTPDPR VPIPSLTEKA LRLLDDMVVV ERPDASDVPS EAELLSITQD 240 LGLFAHLEQP QQPAQLCRVS PPAYLSQPTY PAPRSDWDLE GDELWLSIRQ HSDMDSTCIF 300 VPNP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843406.1	0.0	hypothetical protein CHLNCDRAFT_141258
TrEMBL	E1ZSG5	0.0	E1ZSG5_CHLVA; Uncharacterized protein
STRING	XP_005843406.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Link Out ? help Back to Top
Entrez Gene	17350652

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]