PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_32_00006

Common Name

CHLNCDRAFT_141168

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

bZIP

Protein Properties

Length: 640aa MW: 65615.7 Da PI: 7.3762

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_32_00006	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.1	8e-08	182	213	10	41
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeae 41 +kNR A+rr+R+R k++++eLee v++L+a+ IGS.gm_32_00006 182 QEKNRRAQRRFRERQKQRVAELEEQVAALQAQ 213 68***************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.4E-8	175	218	No hit	No description
SuperFamily	SSF57959	7.8E-6	182	216	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
MTHFVGSEGS TQGPVSVVGD DLPDMGGMEW DDVDAFLDDY LKELGPEAQG QDAFGNFGID 60 FAPSTAVQPE VLGAWGPSAP TPSALPADST QQQGATMLTS QLRAQALGSQ QGPAAAPQRA 120 ASEAVQQPAR ATRARRAAAA ASAGAAAAQA TSAGTSRGGS GGSRGGKETK KELDMKKHLA 180 LQEKNRRAQR RFRERQKQRV AELEEQVAAL QAQLQAAAAG EGGAAAVVAP LPAPAAVRHV 240 ASEGDDMMLH DAVPKLEPNA SPRAVVGAHL PASDDDPPLA AAFKEALTLT VRQGHPVHLT 300 ARQLADMTPA ELARHYKAYV NELAGILVES DNPGAAPTQA RAEPPGCLAA RLAAWPDRVR 360 RLVEEVCLLS TRTAVCNPPG SKHFALTKVD DVSNQPADAR VPQIARALDI TQQQRRQLSQ 420 LRGLLLQKLA RVAAERQDIN HQLAGAVPGG TGSRHLASRY LVAHDCQRRL RESLREEHAL 480 VLDFASTIHK HASGGSGSGA TLAGAHGSGG PATSVGMPMA AGGAAGPMFQ PAAFGGMQAP 540 PMFGQRGMAG PFGQAAPLLH APGGGSDAMN NQVGHTGHSG MHLQLLTTGG SGCLAGPPGM 600 SHLSAAGSGR AGFMCELAGS GQAVPISPNM AALSTANDA*

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

MTHFVGSEGS TQGPVSVVGD DLPDMGGMEW DDVDAFLDDY LKELGPEAQG QDAFGNFGID  60
FAPSTAVQPE VLGAWGPSAP TPSALPADST QQQGATMLTS QLRAQALGSQ QGPAAAPQRA  120
ASEAVQQPAR ATRARRAAAA ASAGAAAAQA TSAGTSRGGS GGSRGGKETK KELDMKKHLA  180
LQEKNRRAQR RFRERQKQRV AELEEQVAAL QAQLQAAAAG EGGAAAVVAP LPAPAAVRHV  240
ASEGDDMMLH DAVPKLEPNA SPRAVVGAHL PASDDDPPLA AAFKEALTLT VRQGHPVHLT  300
ARQLADMTPA ELARHYKAYV NELAGILVES DNPGAAPTQA RAEPPGCLAA RLAAWPDRVR  360
RLVEEVCLLS TRTAVCNPPG SKHFALTKVD DVSNQPADAR VPQIARALDI TQQQRRQLSQ  420
LRGLLLQKLA RVAAERQDIN HQLAGAVPGG TGSRHLASRY LVAHDCQRRL RESLREEHAL  480
VLDFASTIHK HASGGSGSGA TLAGAHGSGG PATSVGMPMA AGGAAGPMFQ PAAFGGMQAP  540
PMFGQRGMAG PFGQAAPLLH APGGGSDAMN NQVGHTGHSG MHLQLLTTGG SGCLAGPPGM  600
SHLSAAGSGR AGFMCELAGS GQAVPISPNM AALSTANDA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843362.1	0.0	expressed protein
TrEMBL	E1ZS84	0.0	E1ZS84_CHLVA; Expressed protein
STRING	XP_005843362.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3867	4	4

Link Out ? help Back to Top
Entrez Gene	17350678

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]