PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_30_00030

Common Name

CHLNCDRAFT_140992

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 605aa MW: 63869.6 Da PI: 6.445

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_30_00030	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	23.6	1.3e-07	9	51	2	46
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTT CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqC 46 C+v gC++dl++ +++ ++++C+ + kap+ g+ rfCqq IGS.gm_30_00030 9 CRVLGCSNDLQS--SFQLKYRICSRCFKAPTLDCGGTPSRFCQQA 51 9*******97..5889************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.3E-9	6	52	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-7	9	52	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-6	9	51	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MPRGGQRGCR VLGCSNDLQS SFQLKYRICS RCFKAPTLDC GGTPSRFCQQ ARAAAAVYTL 60 WMRFLKSGAA AGAAWRGTSC GARAPGRRGA VAVAARGQTE ETEAEAGAEE EAQATDSGGS 120 GAGVEPGDSQ QSEGWEEPAA TPPPARRPRR YPPEQQQQQQ AQQAQQAQQG SEAPVPQAWQ 180 PPGEPPPPWQ APLAPGVRWQ ERQWQQQAEQ ASVGLPWQQT QQAQHAQQAQ QAGWLPAALA 240 WGAEPSCWRQ QLPWAAADPP RPHPQPQQAQ QQAQQQAQQQ AQQAQHPQQA QHPQQAQHPQ 300 HAQQRWQQAG SPQAAAGQLP AWLDAYLPPE PGCGTLPLPP PQQTQQQEQP PRREAAADWL 360 QARWPAAAAA AQAPHPHTAG PAWQGAGWEG GAAQACLAAT APRQPAPADS LAAQSQQEEQ 420 PGEAWQPLAP PPPPLPGRPA PPLGQLVAQA TAALSAALAP AGGAQLAPGE QARLAAEIEA 480 ALCAALVPRG GPEVEVALAG QPAAAAPARL AVSPPPPLPQ PQQPQLPPPH HHHRRQYQQH 540 QQQEQEQEQA QQAGPVASLA ARAEAALEAA LARQQRLAAD LQAARQAAAL AALEQPTGQE 600 GGWE*

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MPRGGQRGCR VLGCSNDLQS SFQLKYRICS RCFKAPTLDC GGTPSRFCQQ ARAAAAVYTL  60
WMRFLKSGAA AGAAWRGTSC GARAPGRRGA VAVAARGQTE ETEAEAGAEE EAQATDSGGS  120
GAGVEPGDSQ QSEGWEEPAA TPPPARRPRR YPPEQQQQQQ AQQAQQAQQG SEAPVPQAWQ  180
PPGEPPPPWQ APLAPGVRWQ ERQWQQQAEQ ASVGLPWQQT QQAQHAQQAQ QAGWLPAALA  240
WGAEPSCWRQ QLPWAAADPP RPHPQPQQAQ QQAQQQAQQQ AQQAQHPQQA QHPQQAQHPQ  300
HAQQRWQQAG SPQAAAGQLP AWLDAYLPPE PGCGTLPLPP PQQTQQQEQP PRREAAADWL  360
QARWPAAAAA AQAPHPHTAG PAWQGAGWEG GAAQACLAAT APRQPAPADS LAAQSQQEEQ  420
PGEAWQPLAP PPPPLPGRPA PPLGQLVAQA TAALSAALAP AGGAQLAPGE QARLAAEIEA  480
ALCAALVPRG GPEVEVALAG QPAAAAPARL AVSPPPPLPQ PQQPQLPPPH HHHRRQYQQH  540
QQQEQEQEQA QQAGPVASLA ARAEAALEAA LARQQRLAAD LQAARQAAAL AALEQPTGQE  600
GGWE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843487.1	0.0	expressed protein
TrEMBL	E1ZRY5	0.0	E1ZRY5_CHLVA; Expressed protein
STRING	XP_005843487.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17350853

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]