PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_2_00598
Common NameCHLNCDRAFT_138131
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 595aa    MW: 59408.5 Da    PI: 9.0472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_2_00598genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12386410327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C ff++tGtC yGd+CkFaH++
  IGS.gm_2_00598 386 RQPCAFFLKTGTCAYGDSCKFAHPF 410
                     679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.73E-5657IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-4869IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5010316.549383411IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7384410IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7385412IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10386410IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-7387408IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.08418431IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDEDEATRLG VLERLQATGR PATAEDLASS LGIPGRVVVG LMERLVAQGV AEEVPANSSQ  60
SPTYRLVQPR RRARNGSGGV QPKVGRPGPM HSPTAAHQAA QQHPYMAGMV PYGYAPYHGQ  120
QVLYYPAGMA PFQQQPMPAG APQWHRPGMP GGARPQQQQA GGGPAGGMGV GPIGVAGPQH  180
MGYPMQPYYY AAAGAPMPLP SNGQPRPAPM PRAASGSSGS TGWGGVPLSQ SSAEVMVGAV  240
PSPRSTQSMQ SAQELPPAGS SQELPLARSR AASSGVGDKE EPAVVAAALA AAEGQAREAV  300
AVVAVAQQAA AAAEPESASQ AGPSSTEGGS EEDGDAQQLA GSVAAGSISS SGGEGAVAAA  360
GSGRRTGSSS GGSSGGSRRS RGSRERQPCA FFLKTGTCAY GDSCKFAHPF DKAPKVDCAF  420
GHTCKFHHPE LPPGGPTAVP AMYAMQYHVQ YQQTASSPML TSLLGLKPGH GGASPMSASP  480
SGPGPVPGYY MAAPPYPGGP HAFPGRPPAM HPVFSTSPAG MPGAQMLRGP TQRPQSGGSK  540
TGPAMAAAAA AAGSMGPVPV PVPLAAAQRP DSARAAASEA AAASPAPAPG SICH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851602.10.0expressed protein
TrEMBLE1Z5C10.0E1Z5C1_CHLVA; Expressed protein
STRINGXP_005851602.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP623277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-08C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]