PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_2_00553
Common NameCHLNCDRAFT_138086
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB_related
Protein Properties Length: 802aa    MW: 82410.9 Da    PI: 6.9202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_2_00553genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-08844340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     +W ++E  ++  a++++G + W+ +a+t+g gR ++ c
   IGS.gm_2_00553  8 AWAPDEAARFFAAFHEHGQD-WAQVAQTVGGGRQGEAC 44
                     69****************99.************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.425152IPR017930Myb domain
PfamPF002491.3E-5845IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-4846IPR009057Homeodomain-like
SMARTSM011356.1E-25256358IPR033471DIRP domain
PfamPF065841.1E-24257357IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MTRRGPAAWA PDEAARFFAA FHEHGQDWAQ VAQTVGGGRQ GEACEALFRR QQAYLSIPQQ  60
LQSAQAFVAM VENAQKEEAS GEPSQRSRSQ GGSGEGQEAA ASGAVAAGLK REEGEEEEED  120
PYLMAGLEGG DLLSELGGMA DLGYITSPGF AHFPPGFVPS PQNPMPRMRR RKSAPERVAP  180
SVASPVKTLF TRRSSLAGGP SLMASFGYPP GGEEGGAGGA AGAAAAAATP QTAAEARLRH  240
CLQQPRTQRW AAAEFCYSAL DRPFFMFNPL AGLLAQLGLG EGARLTRREW CLIRSSLGKP  300
RRLSLKFLKE ERVRLERWRD GCRQQYQSGA AAVAHPKVAD HLPLPLGVGQ RVVARHPATR  360
QLHDGSVLTA AHNCYRVQFD RQELGVELVR DTDVMPAEPS ENLPPALLAG RPHMVLNGRQ  420
IINGQPVRLL APRRPPAAVL PTPAAVPAAA AAAAAAAAAG TPSPAVPGLL PALGAAAAAA  480
GAAGGSGGQQ QQPQQPPPPP QQQQQARAAD AKALAELVVG LDKKEALLLQ LRGMNDEAAA  540
GVHGGAGATA APPFVNAYAS VVLQLKDVND KVQGKLEQLE RRGSGEGAAG GAASPAGGGG  600
AAALQHQQLG ASLAADAALQ RQLQPLRLQP PEPPAQTAEA FSAAALEQAH GIIATCRRKL  660
AESALAEERE AADAGLAPPV PSPDAAQGGA ADGAAVQQQE QEQAQGGGAE AAAAAPAPAA  720
APLDWGSGEG LRLGGLIVGC VHSLVLLLRG AQSGGGLPPA ALPAALDAAL RAVAPHSAAN  780
QQLFREIEEA MRGLQQQISA S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172MRRRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851287.10.0hypothetical protein CHLNCDRAFT_138086
TrEMBLE1Z5830.0E1Z583_CHLVA; Uncharacterized protein
STRINGXP_005851287.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP156722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.24e-37DNA binding
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]