PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_2_00543

Common Name

CHLNCDRAFT_138076

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

GATA

Protein Properties

Length: 566aa MW: 56521 Da PI: 10.1544

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_2_00543	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	26.3	1e-08	153	182	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C Cgt++T++WR ++ LCn+CG++ k + IGS.gm_2_00543 153 CIECGTSSTTQWR---SQGL-LCNSCGVKLIKGR 182 889********...4446.9***9876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.19E-7	144	187	No hit	No description
Gene3D	G3DSA:3.30.50.10	8.4E-8	146	180	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	9.737	147	176	IPR000679	Zinc finger, GATA-type
SMART	SM00401	0.0013	147	194	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MSTAALTAAP LTLPLGMATG GLPPVAADFS IRQSPFSADD ALALQQAIAA AMQPVAQPPS 60 PVQHGGPPAK RVRSAEPSPR AAAGAQQQQF GGKHRPPRPP VLVDSGSLVL DVPREGSGSP 120 AGTGRSPRGG GGAASPGIRR PTKQMSKTLG RVCIECGTSS TTQWRSQGLL CNSCGVKLIK 180 GRLPMDADAM HRRWLRLPPT LRDHPMWAAA KVVAAAQGAA AAAAAAGQPW SCPGCGRQGG 240 ERVAGPCGLQ HCPGCAGRHQ LAAPPSGAAA VAAAVAAPCL SPAAAAPGTG GHKRRKQSTP 300 RSTAADSLSP ASLSSSGSSS IQAYSWQSTR EEGQDDASSK EPSPPGRPTS RRLHLRRKQQ 360 QEEQAHAHHA GGRPAAAAPA TPASGRTPPA AAAAAAAAAA ARLPAETPTA AEAAAALLVL 420 TESDEEPTVV QAGGGRAAAP LHGAMHLLGG GGRHAAAPCA PPAAAAAAAV DSMQLYSQLI 480 TAACTPQAAA AGLCQELVGR YLAAHTQPTQ VLAAAGCAAS PEVAAAIRAQ QEQQARLVST 540 MAAERQYTAV VALMRSVVQL AGLAD*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MSTAALTAAP LTLPLGMATG GLPPVAADFS IRQSPFSADD ALALQQAIAA AMQPVAQPPS  60
PVQHGGPPAK RVRSAEPSPR AAAGAQQQQF GGKHRPPRPP VLVDSGSLVL DVPREGSGSP  120
AGTGRSPRGG GGAASPGIRR PTKQMSKTLG RVCIECGTSS TTQWRSQGLL CNSCGVKLIK  180
GRLPMDADAM HRRWLRLPPT LRDHPMWAAA KVVAAAQGAA AAAAAAGQPW SCPGCGRQGG  240
ERVAGPCGLQ HCPGCAGRHQ LAAPPSGAAA VAAAVAAPCL SPAAAAPGTG GHKRRKQSTP  300
RSTAADSLSP ASLSSSGSSS IQAYSWQSTR EEGQDDASSK EPSPPGRPTS RRLHLRRKQQ  360
QEEQAHAHHA GGRPAAAAPA TPASGRTPPA AAAAAAAAAA ARLPAETPTA AEAAAALLVL  420
TESDEEPTVV QAGGGRAAAP LHGAMHLLGG GGRHAAAPCA PPAAAAAAAV DSMQLYSQLI  480
TAACTPQAAA AGLCQELVGR YLAAHTQPTQ VLAAAGCAAS PEVAAAIRAQ QEQQARLVST  540
MAAERQYTAV VALMRSVVQL AGLAD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005851283.1	0.0	hypothetical protein CHLNCDRAFT_138076
TrEMBL	E1Z574	0.0	E1Z574_CHLVA; Uncharacterized protein
STRING	XP_005851283.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17358688

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]