PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_2_00406

Common Name

CHLNCDRAFT_137939

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

bZIP

Protein Properties

Length: 498aa MW: 49670 Da PI: 6.8623

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_2_00406	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.8	1.8e-11	100	145	2	47
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +e++ e rk+kNR A +sRqR++ +++ Le +v+eLe+eN+aL+ IGS.gm_2_00406 100 EERRLEQRKEKNRATAAASRQRRLDRVAALEARVAELEGENDALRR 145 78899***************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-9	98	148	No hit	No description
SMART	SM00338	2.0E-4	99	165	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.0E-9	100	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.806	101	145	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.78E-6	103	147	No hit	No description
CDD	cd14812	1.05E-13	105	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MLPELEGLLL QQHSTSEVPP PSSGVLTRQR LQRQSSLDLP PLPPTQQRDE GLGLARQLSL 60 SAPAASAAGS QAPANGGARK RAAGGRPKAA KVDLASLPDE ERRLEQRKEK NRATAAASRQ 120 RRLDRVAALE ARVAELEGEN DALRRLLAAH SIQAPAPAGS ADQRQPGAPL PSCDADTTSG 180 PAPAPLGPSE QVCQAAAFMA LSRHTSLPGG GAAPASAAHV PAAPAVPPAS HVSALAVSAA 240 AAAAASDLAA ELGLGPVAAP GLGPLDQQQP FHQPQPSTAV TAPAAAAVDE EADTCSINSP 300 LPQAPHGLAG GVLLWPRQGE APGHALPQPL QPTLGASAAI RAGDVEAEAA QRRGAAAAVL 360 AAMGREQKAQ FLQRLQQLRP ELSGLAGSLL TSLTAPQAKH MAQQAGDDGT AGMDAAPAAG 420 WPVAAVAQEH ELLSQAAAAA AAGGIAGWQL GLGSLPLAAA LATPPGARTG LTPPRLSAGA 480 AAALLASPQP LLNLFSP*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MLPELEGLLL QQHSTSEVPP PSSGVLTRQR LQRQSSLDLP PLPPTQQRDE GLGLARQLSL  60
SAPAASAAGS QAPANGGARK RAAGGRPKAA KVDLASLPDE ERRLEQRKEK NRATAAASRQ  120
RRLDRVAALE ARVAELEGEN DALRRLLAAH SIQAPAPAGS ADQRQPGAPL PSCDADTTSG  180
PAPAPLGPSE QVCQAAAFMA LSRHTSLPGG GAAPASAAHV PAAPAVPPAS HVSALAVSAA  240
AAAAASDLAA ELGLGPVAAP GLGPLDQQQP FHQPQPSTAV TAPAAAAVDE EADTCSINSP  300
LPQAPHGLAG GVLLWPRQGE APGHALPQPL QPTLGASAAI RAGDVEAEAA QRRGAAAAVL  360
AAMGREQKAQ FLQRLQQLRP ELSGLAGSLL TSLTAPQAKH MAQQAGDDGT AGMDAAPAAG  420
WPVAAVAQEH ELLSQAAAAA AAGGIAGWQL GLGSLPLAAA LATPPGARTG LTPPRLSAGA  480
AAALLASPQP LLNLFSP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005851229.1	0.0	hypothetical protein CHLNCDRAFT_137939
TrEMBL	E1Z4W3	0.0	E1Z4W3_CHLVA; Uncharacterized protein
STRING	XP_005851229.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17358788

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]