PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_28_00102

Common Name

CHLNCDRAFT_140071

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

GATA

Protein Properties

Length: 569aa MW: 56669.5 Da PI: 5.7496

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_28_00102	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	32.6	1.1e-10	335	368	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgtt+Tp W r++ tLCnaCG+ +++g IGS.gm_28_00102 335 CAHCGTTDTPRWWRDNYPVGTLCNACGIWLKRHG 368 **************99999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.66E-11	327	375	No hit	No description
SMART	SM00401	9.4E-8	329	380	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.0E-14	329	374	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	14.932	329	373	IPR000679	Zinc finger, GATA-type
CDD	cd00202	1.16E-11	334	373	No hit	No description
Pfam	PF00320	2.8E-8	335	368	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MPAAAAAAPS PLKPLERDAD AIQSLLGLAA APSGELSPTG PWQGWESSGA GREDAQLRRR 60 LSHSDMQQPR LRFPAPLFRL LFGDVSSSSS RGTQVALQTD GGGCVEAAAV QDGGAYLVAG 120 QAVQQLYRTL GADLADVLTF QAAGCTSSGT PIAACCLAAK ADPAVRKAAA AAAAAADAAA 180 AQRSAAGSPA SPELLLPSQQ QRQQQRQAPG SGAGAAGRHA DEQEPLAPPT IANTDALAAA 240 APGSGNTASQ GDAAEAEAAA ALAAAADDES ESAAAAAAVA AAAAAASMDD SGRDPDWQAK 300 PKARGRPRKR RPTGTASTAA GASSGRQAQE AAATCAHCGT TDTPRWWRDN YPVGTLCNAC 360 GIWLKRHGYP RPVQFFLNPL TAGAATTGSA KVAAAAAAAA AQQQQQQQQQ QGSTAGGGGS 420 REAPAEAEYY LINGRPKRRR AAPGGGAPSS STAGAAAGPE AAGEGAAAAA AAASDPPINF 480 EAAGSRAFVA EGGSEPAAAL VHFGWAPSSR AAHDMFGAVS RYGEASQEVT VDDFELLSDC 540 KATATLQLRP GARVASWDAL VLSFVGSL*

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MPAAAAAAPS PLKPLERDAD AIQSLLGLAA APSGELSPTG PWQGWESSGA GREDAQLRRR  60
LSHSDMQQPR LRFPAPLFRL LFGDVSSSSS RGTQVALQTD GGGCVEAAAV QDGGAYLVAG  120
QAVQQLYRTL GADLADVLTF QAAGCTSSGT PIAACCLAAK ADPAVRKAAA AAAAAADAAA  180
AQRSAAGSPA SPELLLPSQQ QRQQQRQAPG SGAGAAGRHA DEQEPLAPPT IANTDALAAA  240
APGSGNTASQ GDAAEAEAAA ALAAAADDES ESAAAAAAVA AAAAAASMDD SGRDPDWQAK  300
PKARGRPRKR RPTGTASTAA GASSGRQAQE AAATCAHCGT TDTPRWWRDN YPVGTLCNAC  360
GIWLKRHGYP RPVQFFLNPL TAGAATTGSA KVAAAAAAAA AQQQQQQQQQ QGSTAGGGGS  420
REAPAEAEYY LINGRPKRRR AAPGGGAPSS STAGAAAGPE AAGEGAAAAA AAASDPPINF  480
EAAGSRAFVA EGGSEPAAAL VHFGWAPSSR AAHDMFGAVS RYGEASQEVT VDDFELLSDC  540
KATATLQLRP GARVASWDAL VLSFVGSL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843680.1	0.0	hypothetical protein CHLNCDRAFT_140071
TrEMBL	E1ZRI7	0.0	E1ZRI7_CHLVA; Uncharacterized protein
STRING	XP_005843680.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4830	8	10

Link Out ? help Back to Top
Entrez Gene	17350995

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]