PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_28_00074

Common Name

CHLNCDRAFT_140043

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 892aa MW: 90978.2 Da PI: 9.0098

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_28_00074	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	66.8	4.4e-21	70	144	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C+v+gC+ l + y++rh++C+vh k++++ ++g+ rfCqqC++ +++ fD ekrsCr+ L++ +rr+ +q+ IGS.gm_28_00074 70 CRVPGCTLRL--LLAYNQRHRICRVHQKSATIDIEGEPWRFCQQCAKLQKVEGFDGEKRSCRDSLNQQKQRRQLNQQ 144 ****9777..668*******************************************************97765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.6E-21	64	129	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	19.187	67	142	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.32E-19	68	144	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.9E-22	70	140	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MVRTSSSSPS PPQGISETIS DPTSSGGGAA AVTEAAATAT AAAASADGSR SGGSGGASRA 60 PPSGRSQPSC RVPGCTLRLL LAYNQRHRIC RVHQKSATID IEGEPWRFCQ QCAKLQKVEG 120 FDGEKRSCRD SLNQQKQRRQ LNQQRQQLLV HQQQHALQQL QREHAQPMGQ APSAGAAVAG 180 LDAGLAQHHQ HEHQPHQPAS KRQRVSPVAT LPPQQAQQLQ AQQQHQQQQA LVAQQEHAEQ 240 QQQQARLQHQ AQQQQQQQQQ QQQAQALHQL AAQQQLEAGQ EQTHACLLGQ LLAAPRQLAQ 300 GQQPAAQSQQ QQQQQLLLQQ QHMRWQASLE RAASADVQQR LLLTSSVLQG LAPFSQPQLQ 360 QAPAEASAGA ALAPPAGPQH QHPQAAPASH LSAADVLEAF NSRLSRLEGQ VQTLLHLLMG 420 QPPQQVRPGL LPPSQPQQPP PGQQPSQQLQ SQQLQQQPSQ QQELQQPGLQ QQQQLVRPVV 480 QHPAPPPWLA PAGGEAAARL GLAHALGSSD LLGSMLSLPS ELLPSLHLAV AQQTQRAQQA 540 QQTQQAQRSV LLQAAKQAAA GGVPLPPGLQ EADRDGVMRM AAELLSSALH GAGSSSGAEN 600 GDSGNAAQAA ATAAGPSSLP LDAAELLGMA GELGLLSVLG LGQAGGASSL PIELKQQLAA 660 AAAAAAELPH RGLSSGGGGE EPRPSAPAAS ASAGMSAAAA KLCTIPRDSL PAAAAAATPA 720 APPAPAAPAH PNPFLAARTA AAAGIGRAMQ LGPGSGSPDT HRSEQLPWPA RHGPTSLDSS 780 RGGSLPPAAA QQPSANEHTA AGAAPAAAAA AGAGTAGAVG SKEGRSGTGA AAAASPGLGG 840 SMGSPAAHLL GAALGSDRSA SASGGSLPLL RSLGGAKPAS LSSLLGHGRS G*

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MVRTSSSSPS PPQGISETIS DPTSSGGGAA AVTEAAATAT AAAASADGSR SGGSGGASRA  60
PPSGRSQPSC RVPGCTLRLL LAYNQRHRIC RVHQKSATID IEGEPWRFCQ QCAKLQKVEG  120
FDGEKRSCRD SLNQQKQRRQ LNQQRQQLLV HQQQHALQQL QREHAQPMGQ APSAGAAVAG  180
LDAGLAQHHQ HEHQPHQPAS KRQRVSPVAT LPPQQAQQLQ AQQQHQQQQA LVAQQEHAEQ  240
QQQQARLQHQ AQQQQQQQQQ QQQAQALHQL AAQQQLEAGQ EQTHACLLGQ LLAAPRQLAQ  300
GQQPAAQSQQ QQQQQLLLQQ QHMRWQASLE RAASADVQQR LLLTSSVLQG LAPFSQPQLQ  360
QAPAEASAGA ALAPPAGPQH QHPQAAPASH LSAADVLEAF NSRLSRLEGQ VQTLLHLLMG  420
QPPQQVRPGL LPPSQPQQPP PGQQPSQQLQ SQQLQQQPSQ QQELQQPGLQ QQQQLVRPVV  480
QHPAPPPWLA PAGGEAAARL GLAHALGSSD LLGSMLSLPS ELLPSLHLAV AQQTQRAQQA  540
QQTQQAQRSV LLQAAKQAAA GGVPLPPGLQ EADRDGVMRM AAELLSSALH GAGSSSGAEN  600
GDSGNAAQAA ATAAGPSSLP LDAAELLGMA GELGLLSVLG LGQAGGASSL PIELKQQLAA  660
AAAAAAELPH RGLSSGGGGE EPRPSAPAAS ASAGMSAAAA KLCTIPRDSL PAAAAAATPA  720
APPAPAAPAH PNPFLAARTA AAAGIGRAMQ LGPGSGSPDT HRSEQLPWPA RHGPTSLDSS  780
RGGSLPPAAA QQPSANEHTA AGAAPAAAAA AGAGTAGAVG SKEGRSGTGA AAAASPGLGG  840
SMGSPAAHLL GAALGSDRSA SASGGSLPLL RSLGGAKPAS LSSLLGHGRS G*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843727.1	0.0	hypothetical protein CHLNCDRAFT_140043
TrEMBL	E1ZRG5	0.0	E1ZRG5_CHLVA; Uncharacterized protein
STRING	XP_005843727.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-12	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Entrez Gene	17350990

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]