PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_28_00059

Common Name

CHLNCDRAFT_140028

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Nin-like

Protein Properties

Length: 1116aa MW: 112699 Da PI: 7.6432

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_28_00059	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	57.6	2.5e-18	10	58	2	50
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +++i+ edl++ F +p ++AA +Lgv+lT+ Kr CR++G++ WP+R++ IGS.gm_28_00059 10 TADITYEDLKARFTMPSQKAAESLGVGLTIFKRLCRRFGLQKWPYRQLL 58 579*******************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.198	1	85	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-16	13	58	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1116 aa Download sequence Send to blast
MRHGSASVYT ADITYEDLKA RFTMPSQKAA ESLGVGLTIF KRLCRRFGLQ KWPYRQLLKQ 60 QREGKRRGGG HHHQDYSCSD ATSEEEEGGS EAETESEWEG KAAAANGRAG SNRQAGKRRK 120 VSAAPPPAAA PQPQPQPAAA PDWGAWQQQQ AAAATASASA QAQAPGVSPW ALPPQGVPPQ 180 AQGLTGGAQL YHAAEPITTG GPGWDGGFSR FQHRPGAPPS WQPQPGPGLA AAAARGPAPT 240 GGGGGGAAGP LGAPPGVGAP LQGPVKTEAG EAALQDGAAG GSFHSLWQAL AQDCAPADGR 300 QALLRRERQQ EAALGEMREQ LLRQYTGGAA PHEALPPPPL TADRSQHQQE RQQQERGQGQ 360 LIRPKPLLPP VALPPAAAGA GSGGSAGVTT TSASSQEALL PLRPLTGSLS SAFLDSLLLP 420 YASMAATPGA GITPTSRGAA AAHDAAGLGL PAWAAPPAGG GGAAADLGAA AALPRSSSSW 480 WALDSPISNA LATPRSLEPQ QHVAALAQEQ TALAQQGLAL SQLIGGLKRE IASIEQRSAQ 540 LAEEAARARR AAAAAAGDDQ QARRLAALRR LAGEQQRQLE TLQAQQASKR DLTPPEAAVL 600 SQLIAGIRRE VGETRASLEA AERAAQRAAQ HAQHAQHAAA AAQAQQARSQ QALSQQQAPA 660 QSHHSHHSQQ GQQAQQQAPG PQQAQLASGA AAAEGQGWGS GGLSSPSTAV AFPRPDSLPM 720 SAATETASGG SGGGAASGSP VTRAASGGAA AVVGDHPTAW RPPQPPQAGD EEGELRAYAA 780 AVKKQRAAAQ LHSLLHQAPA PDASWRQLVQ SQMGKLLKAA AAAPAAAAAQ PAAAAQPAAV 840 LAAGGLGGAA DAEAEAGPGS GSGLTPATPS EHDGLVGGEA GEAAAAAAAA LAGGPGDAAG 900 DEPAGEDDAA TAFLARMTAV HCLQQRLAAR NAQRRQRAMA QAQARFGQLQ QQQEADMERQ 960 ASEGRLAAAS RMQPPSELLA DPALPPAAAE ERVAGPRAEA RSPPSREAAA TAAAAAAAPA 1020 GQPGDSPARE RARGEGEPQV RQVPAPSLPR EPELSLAYQL PAMQHGSAPP QQQAAAAAGA 1080 RPSPTPSSKQ KQEQREERQA AAAGGESDAA KPRDA*

Sequence ? help Back to Top

Protein Sequence Length: 1116 aa Download sequence Send to blast

MRHGSASVYT ADITYEDLKA RFTMPSQKAA ESLGVGLTIF KRLCRRFGLQ KWPYRQLLKQ  60
QREGKRRGGG HHHQDYSCSD ATSEEEEGGS EAETESEWEG KAAAANGRAG SNRQAGKRRK  120
VSAAPPPAAA PQPQPQPAAA PDWGAWQQQQ AAAATASASA QAQAPGVSPW ALPPQGVPPQ  180
AQGLTGGAQL YHAAEPITTG GPGWDGGFSR FQHRPGAPPS WQPQPGPGLA AAAARGPAPT  240
GGGGGGAAGP LGAPPGVGAP LQGPVKTEAG EAALQDGAAG GSFHSLWQAL AQDCAPADGR  300
QALLRRERQQ EAALGEMREQ LLRQYTGGAA PHEALPPPPL TADRSQHQQE RQQQERGQGQ  360
LIRPKPLLPP VALPPAAAGA GSGGSAGVTT TSASSQEALL PLRPLTGSLS SAFLDSLLLP  420
YASMAATPGA GITPTSRGAA AAHDAAGLGL PAWAAPPAGG GGAAADLGAA AALPRSSSSW  480
WALDSPISNA LATPRSLEPQ QHVAALAQEQ TALAQQGLAL SQLIGGLKRE IASIEQRSAQ  540
LAEEAARARR AAAAAAGDDQ QARRLAALRR LAGEQQRQLE TLQAQQASKR DLTPPEAAVL  600
SQLIAGIRRE VGETRASLEA AERAAQRAAQ HAQHAQHAAA AAQAQQARSQ QALSQQQAPA  660
QSHHSHHSQQ GQQAQQQAPG PQQAQLASGA AAAEGQGWGS GGLSSPSTAV AFPRPDSLPM  720
SAATETASGG SGGGAASGSP VTRAASGGAA AVVGDHPTAW RPPQPPQAGD EEGELRAYAA  780
AVKKQRAAAQ LHSLLHQAPA PDASWRQLVQ SQMGKLLKAA AAAPAAAAAQ PAAAAQPAAV  840
LAAGGLGGAA DAEAEAGPGS GSGLTPATPS EHDGLVGGEA GEAAAAAAAA LAGGPGDAAG  900
DEPAGEDDAA TAFLARMTAV HCLQQRLAAR NAQRRQRAMA QAQARFGQLQ QQQEADMERQ  960
ASEGRLAAAS RMQPPSELLA DPALPPAAAE ERVAGPRAEA RSPPSREAAA TAAAAAAAPA  1020
GQPGDSPARE RARGEGEPQV RQVPAPSLPR EPELSLAYQL PAMQHGSAPP QQQAAAAAGA  1080
RPSPTPSSKQ KQEQREERQA AAAGGESDAA KPRDA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843660.1	0.0	hypothetical protein CHLNCDRAFT_140028
TrEMBL	E1ZRF2	0.0	E1ZRF2_CHLVA; Uncharacterized protein
STRING	XP_005843660.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-07	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17350998

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]