PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_28_00045 | ||||||||
Common Name | CHLNCDRAFT_140014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | SBP | ||||||||
Protein Properties | Length: 497aa MW: 52091.6 Da PI: 8.4503 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 38.3 | 3.5e-12 | 79 | 137 | 20 | 76 |
HTT--HHHHT-S-EEETTEEE..EE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 20 rhkvCevhskapvvlvsgleq..rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 h++C +h a ++ v+g+ q r+CqqC++ h+++ef + rsC++ L++ +r+r++ IGS.gm_28_00045 79 LHRICAAHRAALQIEVAGQAQalRYCQQCTKVHTVDEFGGDARSCQHSLQRRRQRKRRQ 137 49***********9999988777****************************99999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.3E-14 | 44 | 124 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 15.725 | 47 | 137 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.46E-11 | 49 | 138 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-13 | 77 | 136 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MTEGEPGGSC EQQTQASAGS GTSDGTGAAA GSDASKKQRQ RRTTPASPAC RIAGCSQALT 60 HSYNKASMRA GHAARSSPLH RICAAHRAAL QIEVAGQAQA LRYCQQCTKV HTVDEFGGDA 120 RSCQHSLQRR RQRKRRQLQR EAGGGGDPAH DCQPEPEPRQ QPGSRPGERS PSQRQRQASF 180 GASSGAAPAG GASWRGSPAS GGTLSQAEED PGLQGQPWEL QPGGHPPAQL IRCHSAPQPL 240 TAPMSAPPTP PVLLPPTPQP SALQQHPQLL IAGRQLGGQQ ALQGQLPLLP DVPAEIRTGP 300 WQPGPGPDKP ALSATSAAAL PPYASPQALP PTRELHWCQQ QPAAPRLGRA CSVPAPGNLP 360 PVPLLALRTQ PCPRLVEQAA WLLEDDLGLL MGDGHNVVPS EAEMLAIAQE LEAAHPQPAP 420 QLPVLPQEQL PAAAAAPAAA PGWPASPALA LLAAQQAQRA QQAAHALHLQ WRQLLQQEQG 480 LAPFPSRFFQ TTPFDR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 136 | RRQRKRRQ |
2 | 131 | 136 | QRKRRQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005843654.1 | 0.0 | hypothetical protein CHLNCDRAFT_140014 | ||||
TrEMBL | E1ZRE1 | 0.0 | E1ZRE1_CHLVA; Uncharacterized protein | ||||
STRING | XP_005843654.1 | 0.0 | (Chlorella variabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 8e-09 | SBP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17351049 |
Publications ? help Back to Top | |||
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