PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_27_00028

Common Name

CHLNCDRAFT_139850

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 568aa MW: 57099.2 Da PI: 7.2527

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_27_00028	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	70.6	3e-22	7	80	1	73
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 +CqvegC adl+ +++y++r ++Ce h++a ++ + g rfCqqC++ l f+ +krsCr Lak rr IGS.gm_27_00028 7 ACQVEGCPADLAGLRSYFQRQHICEEHARADAIPdAYGGFMRFCQQCTKLEPLAAFEGTKRSCRASLAKRHLRR 80 5***************************9997467899**************************988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	18.495	5	83	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.8E-21	6	70	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.45E-19	7	81	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.0E-26	8	80	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MRRPSLACQV EGCPADLAGL RSYFQRQHIC EEHARADAIP DAYGGFMRFC QQCTKLEPLA 60 AFEGTKRSCR ASLAKRHLRR SGGRRAPSAS DIATRSYSSN EQEEGRAASL AHGVPGLDGG 120 GAGMGGIQRA VAFAAAAAAA AAAGERGSPC SAVSRQPDGT TRSTTAGAPA QLAALLEAAL 180 PPLSSDEPGP GGSAGAAAVA AAAGGLTQHQ MGPVPIGAVE LKGSSILEPQ PEPAQQSGHL 240 SAHLPPLRPT PSHGGTGLPS LAALTGGGPA LATGAPAEPP ANFLAAVLGG GAPPSPPGSA 300 PSAAATAFHA PRGSGDTIVG PNASELLPYL ASVLSSRASV EQPAAAPRGG AAALRLADMA 360 APQHALLQEL QQQQDLEQLL TALQMLQQLQ GLIGGIVVGQ LQQQLARVEA AALLDQQLLP 420 LLAGIQARQA AASAAVAQHG GASGDPQLRA EARGVQQQLD HILGQLGQLV GVLQAAPPPG 480 LTAQVLAAQQ HAAQQQAQQQ QHAAQQLQQQ QLADATASAQ QQQKQDGGAA HSAPAGQLGP 540 AQVNGGIGAE QLHALLQRIS PMLKRQE*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MRRPSLACQV EGCPADLAGL RSYFQRQHIC EEHARADAIP DAYGGFMRFC QQCTKLEPLA  60
AFEGTKRSCR ASLAKRHLRR SGGRRAPSAS DIATRSYSSN EQEEGRAASL AHGVPGLDGG  120
GAGMGGIQRA VAFAAAAAAA AAAGERGSPC SAVSRQPDGT TRSTTAGAPA QLAALLEAAL  180
PPLSSDEPGP GGSAGAAAVA AAAGGLTQHQ MGPVPIGAVE LKGSSILEPQ PEPAQQSGHL  240
SAHLPPLRPT PSHGGTGLPS LAALTGGGPA LATGAPAEPP ANFLAAVLGG GAPPSPPGSA  300
PSAAATAFHA PRGSGDTIVG PNASELLPYL ASVLSSRASV EQPAAAPRGG AAALRLADMA  360
APQHALLQEL QQQQDLEQLL TALQMLQQLQ GLIGGIVVGQ LQQQLARVEA AALLDQQLLP  420
LLAGIQARQA AASAAVAQHG GASGDPQLRA EARGVQQQLD HILGQLGQLV GVLQAAPPPG  480
LTAQVLAAQQ HAAQQQAQQQ QHAAQQLQQQ QLADATASAQ QQQKQDGGAA HSAPAGQLGP  540
AQVNGGIGAE QLHALLQRIS PMLKRQE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843758.1	0.0	hypothetical protein CHLNCDRAFT_139850
TrEMBL	E1ZR24	0.0	E1ZR24_CHLVA; Uncharacterized protein
STRING	XP_005843758.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	6e-14	squamosa promoter binding protein-like 5

Link Out ? help Back to Top
Entrez Gene	17351163

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]