PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_25_00067

Common Name

CHLNCDRAFT_139516

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

bZIP

Protein Properties

Length: 511aa MW: 51707.8 Da PI: 6.5097

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_25_00067	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.1	7.9e-13	357	416	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++r rr +NRe+ArrsR+R++ ++ Le++ ++L++ N++L el++ + + +l +e IGS.gm_25_00067 357 EIRRLRRTLSNRESARRSRRRRQTQVSSLETELEALKTDNERLEFELSQTSSAAHQLAAE 416 799**********************************************99999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-8	355	426	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-11	356	414	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.955	357	420	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.61E-9	358	413	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-9	359	414	No hit	No description
PROSITE pattern	PS00036	0	362	377	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MAAGHLGAGG FLDLLGGSEF LGSLGPAAAA PSHRQQHPSA ASATRRSLEE ARAAQHAAQH 60 AAQLSGMDVA MLEELLPLSE LHDPFLEADW PQELPAAAAQ PDGCAAAPAQ QQQQQQQRLS 120 SAVHPAAPLL FSGIPAYAEP DIPAAAAARM NNSAGLSMGY GLGEGLAALP GSPHPSSGLP 180 MHPQGLASMA AAAFCTQPAF AAPPAAQGVG GGLPPAIAAA QQRAAAKMQV GNGSSGGNSH 240 ISNSSSGADP AAAAAPPPLG APPRQCAQPP SDDSSGEQLE DEHLEDASGT PSHSAAAAAS 300 ADPALAGASA TAAAAGASSG VPFSAGEGGK QPAKRGGRPR EKKSYDALID PSLPIEEIRR 360 LRRTLSNRES ARRSRRRRQT QVSSLETELE ALKTDNERLE FELSQTSSAA HQLAAEKAAL 420 LAEVERLRVQ LAQVSTCGAP PLAQHMPASA PMPVAAQQPT PVSLHMAAPA PSPVTLQPAM 480 QQAMHRASAA HAAGLPPAIE QAQRLAHKLL *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MAAGHLGAGG FLDLLGGSEF LGSLGPAAAA PSHRQQHPSA ASATRRSLEE ARAAQHAAQH  60
AAQLSGMDVA MLEELLPLSE LHDPFLEADW PQELPAAAAQ PDGCAAAPAQ QQQQQQQRLS  120
SAVHPAAPLL FSGIPAYAEP DIPAAAAARM NNSAGLSMGY GLGEGLAALP GSPHPSSGLP  180
MHPQGLASMA AAAFCTQPAF AAPPAAQGVG GGLPPAIAAA QQRAAAKMQV GNGSSGGNSH  240
ISNSSSGADP AAAAAPPPLG APPRQCAQPP SDDSSGEQLE DEHLEDASGT PSHSAAAAAS  300
ADPALAGASA TAAAAGASSG VPFSAGEGGK QPAKRGGRPR EKKSYDALID PSLPIEEIRR  360
LRRTLSNRES ARRSRRRRQT QVSSLETELE ALKTDNERLE FELSQTSSAA HQLAAEKAAL  420
LAEVERLRVQ LAQVSTCGAP PLAQHMPASA PMPVAAQQPT PVSLHMAAPA PSPVTLQPAM  480
QQAMHRASAA HAAGLPPAIE QAQRLAHKLL *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005844097.1	0.0	hypothetical protein CHLNCDRAFT_139516
TrEMBL	E1ZQB4	0.0	E1ZQB4_CHLVA; Uncharacterized protein
STRING	XP_005844097.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17351434

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]