PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_24_00045
Common NameCHLNCDRAFT_139265
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family AP2
Protein Properties Length: 406aa    MW: 42141.8 Da    PI: 10.1482
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_24_00045genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-114296155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y GV+++k++g W+A+++   + +gk  + +lg++ ta+ Aa+ +++a +kl+g
  IGS.gm_24_00045 42 SPYVGVTQYKRTGHWEAHVWIQ-NpRGKGYQRHLGSYATADVAARVYDRAVLKLRG 96
                     679***************7773.236666888**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-1242105IPR016177DNA-binding domain
SMARTSM003804.7E-1843110IPR001471AP2/ERF domain
PROSITE profilePS5103215.23743104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-1344105IPR001471AP2/ERF domain
CDDcd000181.07E-1444104No hitNo description
PfamPF008472.6E-54496IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEQGVDRIAA AAAGAAADAA ADDTAATQKS KKRRSGPKSK TSPYVGVTQY KRTGHWEAHV  60
WIQNPRGKGY QRHLGSYATA DVAARVYDRA VLKLRGKGAE LNFPLADYEA DAFMQEHVGT  120
DRIKFLDLLR ARFSLQVVRA PRSVQRVTVH EHPIPVEPLH GSQHRRSTPA AAAASVQREQ  180
DRDQSAVHAS LHSPAGRGKG LVRPSLSLEA SEEQLLITTA PMTNSQMQLL LPGPPGSLLA  240
GGGGANSAGI TPCSSPDRAL SALPQLSLEM PPPPKLRRTS ADGEAGGPGG SNVLASAVLH  300
PSLAGGGTFM FGAGFGGGYG YGVPNPLLLP GLALHQQVQA SQMAAQAAAV GTIPATPANT  360
SAAALPALFA PSPTALGSYR PPGLRLPTLT VDNLLPDWMA LLGPQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844154.10.0hypothetical protein CHLNCDRAFT_139265
TrEMBLE1ZPW70.0E1ZPW7_CHLVA; Uncharacterized protein
STRINGXP_005844154.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP575168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-11related to AP2.7
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]