PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_22_00154

Common Name

CHLNCDRAFT_138913

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 441aa MW: 46252.4 Da PI: 7.1541

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_22_00154	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	84.1	1.8e-26	57	129	3	77
SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 3 qvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 q C a l +k +h+r+++C + +++vlv+g++qrfCqqC+rfhel f + rsCr++Lakh errr+++ IGS.gm_22_00154 57 Q--ICGASLDGLKLFHQRYHICVPCMASESVLVKGIQQRFCQQCGRFHELAAFAPTMRSCRKQLAKHAERRRRAR 129 4..49*******************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	20.956	53	128	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.28E-21	56	128	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.7E-20	56	115	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-24	57	127	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MAAFGPAAVE GPEEALQAGQ EAAPAGAAYA AGSLPAPSPD RPVKRKPGRP ALHHGCQICG 60 ASLDGLKLFH QRYHICVPCM ASESVLVKGI QQRFCQQCGR FHELAAFAPT MRSCRKQLAK 120 HAERRRRARE LAARAISEAA AATAGGGAGQ QRGTQQPLAP DSSREGDEAS KGPSDSHIQD 180 LSQGQPAGLL PPAKRSRLGD EPQQQQQQHH QVLMPLPVGR LPELSPGLLP PAWCLNESGG 240 SAISTAMHQS LQSLQESGLD ALLAAAAGEG GGEAEAPPHR PEPLQQLPVG IPGSAAVLPA 300 ASTAAPLAPH AVPPPQQQVP DVAAFAAALL QATAQLGQQQ QQQQLQQQQQ QQQQLGLQAL 360 QQVLAPPQQQ QLQQQQQLDL QTLQQLLLPP QQPRASPAPP ALLQSVPLLQ QPAPQEQQVT 420 AMFEAAIGVL LHGILSTQPP *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MAAFGPAAVE GPEEALQAGQ EAAPAGAAYA AGSLPAPSPD RPVKRKPGRP ALHHGCQICG  60
ASLDGLKLFH QRYHICVPCM ASESVLVKGI QQRFCQQCGR FHELAAFAPT MRSCRKQLAK  120
HAERRRRARE LAARAISEAA AATAGGGAGQ QRGTQQPLAP DSSREGDEAS KGPSDSHIQD  180
LSQGQPAGLL PPAKRSRLGD EPQQQQQQHH QVLMPLPVGR LPELSPGLLP PAWCLNESGG  240
SAISTAMHQS LQSLQESGLD ALLAAAAGEG GGEAEAPPHR PEPLQQLPVG IPGSAAVLPA  300
ASTAAPLAPH AVPPPQQQVP DVAAFAAALL QATAQLGQQQ QQQQLQQQQQ QQQQLGLQAL  360
QQVLAPPQQQ QLQQQQQLDL QTLQQLLLPP QQPRASPAPP ALLQSVPLLQ QPAPQEQQVT  420
AMFEAAIGVL LHGILSTQPP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-17	56	127	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005844521.1	0.0	hypothetical protein CHLNCDRAFT_138913
TrEMBL	E1ZNX4	0.0	E1ZNX4_CHLVA; Uncharacterized protein
STRING	XP_005844521.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	8e-16	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Entrez Gene	17351978

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]