PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_21_00140

Common Name

CHLNCDRAFT_138661

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 1281aa MW: 128507 Da PI: 7.3209

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_21_00140	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	28.9	3.1e-09	144	189	2	49
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 Cqv C+ad+s +key++r+k+C h +p ++ g++ rfCqq r IGS.gm_21_00140 144 CQV--CHADVSALKEYYQRYKICPNHCVMPCIVRGGEHLRFCQQLERH 189 665..***************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.6E-12	140	189	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	10.349	141	206	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-9	144	190	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.89E-10	144	189	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1281 aa Download sequence Send to blast
MQGASWLQQA AAPAAPSADG DRPAFGAAAA AAGAALALAQ GSPRLMMAPS QALLHIPWAL 60 DQFQWDSAAL TATQAAAPPS AALAAQGAAA WAQAQPFSQF DGAAAAASDA SGSSSLLPGW 120 PDAAAPAPDA AAMAFGGSRG GAACQVCHAD VSALKEYYQR YKICPNHCVM PCIVRGGEHL 180 RFCQQLERHN ERRRNLTSQK KKKGQEGAGA AVGGAATLGA PLASTAGPGA ENRRRRQKRA 240 ASAEAEEAPG AAAQPAVLPR VLAPAGAAPA GIASGRGQAA MDLDDLPLLL GMAGVPSPPA 300 TRLLQLPPLP GLLSPELGIE GLLVPSPPRL APSLPPGSAA QAAAAGPAHP TVQPRAGSEQ 360 QEQQRQQQLQ AVIAAARVSG AALPGRTAQA PPAPHQAGTP AGQAPAPGGH DFDALITDLF 420 GPCAGGQEGG HAWLAELLLP AVVARASAQQ QQQQQVKQEQ ALPGAFPAGL PSAPQQQLQH 480 RQEWSYQPPP PSSFVPSPGL PASSYGAAGA AAPAHAPLPA PFLQGDTPTP QPLLPAGQLR 540 QLAGGHAPPP ESLQQALQMI QWQQQQEQAA REQEQAQQQA QEQELLPLEE QARSIRLSMK 600 LFSSTPDQLP PELRQELAAL LCSPNLEGYL RPGCDPQQLA LLQQQGLAAA LEQLLQGQSG 660 LGSLLQRVPA LVQLEGEVAL VSAGRVVRIL QLSSCAGIVP TINSISPIAL HTGPAATASS 720 SGASNARDSI LVRGQNLAGQ QQRLLVRSGG SYPLVEILAS SGTAGGTTRA SVAAAFERPA 780 EEWLEIRLPQ AQQGLFTVEV QRGALLGSSR VLLALDNAAA VAELRQLEGC TAGFASVDTF 840 LRSIALVLHH RQVQAQQQGG TTTDGSGTDG FDPASGTATD SDHPAESAAA ALAAAASSAA 900 RAGVVAASRR GWPALAALLL PSVAADGSST EHAVHAMDAL CPAGATLLLL AAASGSAAVL 960 EACFSWDVAA PAGPAALTPL HIGAAARSGP VVKALFEMDP AGASQAWHTA LSSDGLTPAT 1020 FAAWSKQRQQ EQQQPAVPGA APSAGSAALS LSSRAGSSCS KAGSRLEGSM VLGPVDEEAP 1080 AEPSALPAHK RQGSRSSLPG SPTGVAAASA TSDSSDGSSQ LLGRLSRLSV ASSASQPGTP 1140 QRQWSAAASL PGTPGSRRGA APAPATPTAG VDSMPRPSNP GTPAGSVLGP SASASASPAA 1200 AAKAAAGAGS ISTSIIVSAQ TASPTAALPS HAAPPPAAPG SGSIPAQRPG GGGACWAAGH 1260 GLRKLGARLL RWCRDAGPRL *

Sequence ? help Back to Top

Protein Sequence Length: 1281 aa Download sequence Send to blast

MQGASWLQQA AAPAAPSADG DRPAFGAAAA AAGAALALAQ GSPRLMMAPS QALLHIPWAL  60
DQFQWDSAAL TATQAAAPPS AALAAQGAAA WAQAQPFSQF DGAAAAASDA SGSSSLLPGW  120
PDAAAPAPDA AAMAFGGSRG GAACQVCHAD VSALKEYYQR YKICPNHCVM PCIVRGGEHL  180
RFCQQLERHN ERRRNLTSQK KKKGQEGAGA AVGGAATLGA PLASTAGPGA ENRRRRQKRA  240
ASAEAEEAPG AAAQPAVLPR VLAPAGAAPA GIASGRGQAA MDLDDLPLLL GMAGVPSPPA  300
TRLLQLPPLP GLLSPELGIE GLLVPSPPRL APSLPPGSAA QAAAAGPAHP TVQPRAGSEQ  360
QEQQRQQQLQ AVIAAARVSG AALPGRTAQA PPAPHQAGTP AGQAPAPGGH DFDALITDLF  420
GPCAGGQEGG HAWLAELLLP AVVARASAQQ QQQQQVKQEQ ALPGAFPAGL PSAPQQQLQH  480
RQEWSYQPPP PSSFVPSPGL PASSYGAAGA AAPAHAPLPA PFLQGDTPTP QPLLPAGQLR  540
QLAGGHAPPP ESLQQALQMI QWQQQQEQAA REQEQAQQQA QEQELLPLEE QARSIRLSMK  600
LFSSTPDQLP PELRQELAAL LCSPNLEGYL RPGCDPQQLA LLQQQGLAAA LEQLLQGQSG  660
LGSLLQRVPA LVQLEGEVAL VSAGRVVRIL QLSSCAGIVP TINSISPIAL HTGPAATASS  720
SGASNARDSI LVRGQNLAGQ QQRLLVRSGG SYPLVEILAS SGTAGGTTRA SVAAAFERPA  780
EEWLEIRLPQ AQQGLFTVEV QRGALLGSSR VLLALDNAAA VAELRQLEGC TAGFASVDTF  840
LRSIALVLHH RQVQAQQQGG TTTDGSGTDG FDPASGTATD SDHPAESAAA ALAAAASSAA  900
RAGVVAASRR GWPALAALLL PSVAADGSST EHAVHAMDAL CPAGATLLLL AAASGSAAVL  960
EACFSWDVAA PAGPAALTPL HIGAAARSGP VVKALFEMDP AGASQAWHTA LSSDGLTPAT  1020
FAAWSKQRQQ EQQQPAVPGA APSAGSAALS LSSRAGSSCS KAGSRLEGSM VLGPVDEEAP  1080
AEPSALPAHK RQGSRSSLPG SPTGVAAASA TSDSSDGSSQ LLGRLSRLSV ASSASQPGTP  1140
QRQWSAAASL PGTPGSRRGA APAPATPTAG VDSMPRPSNP GTPAGSVLGP SASASASPAA  1200
AAKAAAGAGS ISTSIIVSAQ TASPTAALPS HAAPPPAAPG SGSIPAQRPG GGGACWAAGH  1260
GLRKLGARLL RWCRDAGPRL *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005844784.1	0.0	hypothetical protein CHLNCDRAFT_138661
TrEMBL	E1ZNH4	0.0	E1ZNH4_CHLVA; Uncharacterized protein
STRING	XP_005844784.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	4e-08	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Entrez Gene	17352122

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]