PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_21_00108
Common NameCHLNCDRAFT_138629
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family E2F/DP
Protein Properties Length: 769aa    MW: 77655 Da    PI: 6.9236
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_21_00108genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP375.8e-122633072271
          E2F_TDP  22 egivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++ ln+va++L    v   rRR+YD++NV+e+++++ +  k  ++w g
  IGS.gm_21_00108 263 ANMLMLNDVAEAL---GV--PRRRLYDVINVFESIEVMRRVGKLMYEWVG 307
                      47899********...9*..****************************87 PP

2E2F_TDP277.3e-09355444370
          E2F_TDP   3 eksLrlltqkflkllekseegivtlnevakeLvse....................dvknkrRRiYDilNVLealnliek....kekneirwk 70 
                      ++sL++l+++++++l k ++g + l  +a  Lv +                     + +  RR+YDi  +L +++l+e+    k++++++w+
  IGS.gm_21_00108 355 SHSLWVLSRRLVRMLLK-QRGPIALTAAAAVLVGPggvadpskhrsqtqaswraqGI-TVERRLYDIGSILCSVGLLERiymkKRQPAFEWI 444
                      68********9999987.88**************9*****************99733.679*****************99987888889886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013726.6E-10216307IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.0E-14220309IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-8262308IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-10263307IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013725.3E-5353445IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.9E-8354444IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.1E-10355444IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MPVPQADSDS QQEQPAPGGG KKQQQELEQP AAGKAAPGPH PANGGGAAGG DPRAPAGAAK  60
AGGGVKGDEH DDNTAAALLL GMGSKSDSDG GGSAGSSGRD RANGGAGGGG VAAAARRRAL  120
ERGASAAANG AAAGEDEEEE EGEGEEESEE EQQRRARGKG RRGGGAVRRS TRRGRTPAYR  180
ASELLGSGSD DEFEPGSKRT AKAAAGGART PTTVVPQKSE LTLLCERFQQ HQFSGVLSFG  240
GPPRLPRAWE VPVPVLALAD GSANMLMLND VAEALGVPRR RLYDVINVFE SIEVMRRVGK  300
LMYEWVGFDH LPGLLEQLAE DETNGVPVED RIRRAPTLII VNEAGEEIGS GKGNSHSLWV  360
LSRRLVRMLL KQRGPIALTA AAAVLVGPGG VADPSKHRSQ TQASWRAQGI TVERRLYDIG  420
SILCSVGLLE RIYMKKRQPA FEWIYGWRPG DTHDPPKLPN RVATAAAGDD DAGGGGGGGG  480
RAGRKRAAKA AAAAAAAAGP DAKKFKTAAE AAAEAAMLAG GGGMAAAMGA MPFGMPMAGF  540
GHMMMPPPGM VGMGAGGGAG ASPAMFMGGM AGMTQMGDDK QAAAAMAGGM QMGPFFAPPG  600
AFFANPMMQM NGMPMAMPAA AAAAAEPSPP SAEPAGPEGS VDSGAAAAAA RAADDAAAAA  660
AAAAAGGMPG MAGGHGMMMW HPQMAMMNPA MMQQYQQYQQ AAMMKSGEHQ VAAGGCKPGG  720
APMGGAAASP FPGMMMAPGM MMAPYPLMQP MQNFVPVAAG AASAAAPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A7e-152164392232Transcription factor E2F8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844700.10.0hypothetical protein CHLNCDRAFT_138629
TrEMBLE1ZNF30.0E1ZNF3_CHLVA; Uncharacterized protein
STRINGXP_005844700.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.14e-18DP-E2F-like protein 3
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]