PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_21_00108 | ||||||||
Common Name | CHLNCDRAFT_138629 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | E2F/DP | ||||||||
Protein Properties | Length: 769aa MW: 77655 Da PI: 6.9236 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 37 | 5.8e-12 | 263 | 307 | 22 | 71 |
E2F_TDP 22 egivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++ ln+va++L v rRR+YD++NV+e+++++ + k ++w g IGS.gm_21_00108 263 ANMLMLNDVAEAL---GV--PRRRLYDVINVFESIEVMRRVGKLMYEWVG 307 47899********...9*..****************************87 PP | |||||||
2 | E2F_TDP | 27 | 7.3e-09 | 355 | 444 | 3 | 70 |
E2F_TDP 3 eksLrlltqkflkllekseegivtlnevakeLvse....................dvknkrRRiYDilNVLealnliek....kekneirwk 70 ++sL++l+++++++l k ++g + l +a Lv + + + RR+YDi +L +++l+e+ k++++++w+ IGS.gm_21_00108 355 SHSLWVLSRRLVRMLLK-QRGPIALTAAAAVLVGPggvadpskhrsqtqaswraqGI-TVERRLYDIGSILCSVGLLERiymkKRQPAFEWI 444 68********9999987.88**************9*****************99733.679*****************99987888889886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 6.6E-10 | 216 | 307 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.0E-14 | 220 | 309 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.62E-8 | 262 | 308 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.5E-10 | 263 | 307 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SMART | SM01372 | 5.3E-5 | 353 | 445 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.9E-8 | 354 | 444 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 4.1E-10 | 355 | 444 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 769 aa Download sequence Send to blast |
MPVPQADSDS QQEQPAPGGG KKQQQELEQP AAGKAAPGPH PANGGGAAGG DPRAPAGAAK 60 AGGGVKGDEH DDNTAAALLL GMGSKSDSDG GGSAGSSGRD RANGGAGGGG VAAAARRRAL 120 ERGASAAANG AAAGEDEEEE EGEGEEESEE EQQRRARGKG RRGGGAVRRS TRRGRTPAYR 180 ASELLGSGSD DEFEPGSKRT AKAAAGGART PTTVVPQKSE LTLLCERFQQ HQFSGVLSFG 240 GPPRLPRAWE VPVPVLALAD GSANMLMLND VAEALGVPRR RLYDVINVFE SIEVMRRVGK 300 LMYEWVGFDH LPGLLEQLAE DETNGVPVED RIRRAPTLII VNEAGEEIGS GKGNSHSLWV 360 LSRRLVRMLL KQRGPIALTA AAAVLVGPGG VADPSKHRSQ TQASWRAQGI TVERRLYDIG 420 SILCSVGLLE RIYMKKRQPA FEWIYGWRPG DTHDPPKLPN RVATAAAGDD DAGGGGGGGG 480 RAGRKRAAKA AAAAAAAAGP DAKKFKTAAE AAAEAAMLAG GGGMAAAMGA MPFGMPMAGF 540 GHMMMPPPGM VGMGAGGGAG ASPAMFMGGM AGMTQMGDDK QAAAAMAGGM QMGPFFAPPG 600 AFFANPMMQM NGMPMAMPAA AAAAAEPSPP SAEPAGPEGS VDSGAAAAAA RAADDAAAAA 660 AAAAAGGMPG MAGGHGMMMW HPQMAMMNPA MMQQYQQYQQ AAMMKSGEHQ VAAGGCKPGG 720 APMGGAAASP FPGMMMAPGM MMAPYPLMQP MQNFVPVAAG AASAAAPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 7e-15 | 216 | 439 | 2 | 232 | Transcription factor E2F8 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005844700.1 | 0.0 | hypothetical protein CHLNCDRAFT_138629 | ||||
TrEMBL | E1ZNF3 | 0.0 | E1ZNF3_CHLVA; Uncharacterized protein | ||||
STRING | XP_005844700.1 | 0.0 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4186 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01330.1 | 4e-18 | DP-E2F-like protein 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 17352063 |
Publications ? help Back to Top | |||
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