PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_20_00155
Common NameCHLNCDRAFT_138406
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family E2F/DP
Protein Properties Length: 446aa    MW: 45853.2 Da    PI: 4.843
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_20_00155genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.74e-2358121169
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirw 69 
                      r+++sL+llt+kf+ l+e++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++li k  kn++r 
  IGS.gm_20_00155  58 RYDSSLGLLTRKFIGLMEEAEQGVLDLNKAAEAL---HV--QKRRIYDITNVLEGIGLIGKCGKNNVRF 121
                      6899******************************...99..*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-2454123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.8E-2958123IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.12E-1458120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.7E-2160121IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.17E-30166267No hitNo description
SuperFamilySSF1440742.07E-14167267No hitNo description
PfamPF164212.5E-16169266IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGRTTRAARQ ASPEEEEQEE PGSVAVRRGR RSAQGVYSRS PARGSGTATG GSQTTGCRYD  60
SSLGLLTRKF IGLMEEAEQG VLDLNKAAEA LHVQKRRIYD ITNVLEGIGL IGKCGKNNVR  120
FTAPQHSVGS SGQDQQQQGS TGGSDSGGRA PAGADGSGEG EEGAPVAALQ SELEGMRSAE  180
SGLDSQLASL WGAMRRMTDH ALNRQRLYVT DSDVMALPPM RASDQVVAVL APQGTTLEVP  240
EPEAGLAQGA RRYRIIIKSE REPVEVWKFL ARPSQPGERI AAGDAAAAAA AAAAMEQGPA  300
ALRGAGAALA AAGSGEEDHG MRVGGEDVED EMGEASSPPP PPFGRLPSIA PSPDAGMLWE  360
VQPPMGISPA LPFLTGHMLH GGHGGIPPPP PPLPPAPPSP GALLRLDASE AWFSGDPGSA  420
GGGTGAFPTL ADLFRDPANV SVLNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A5e-1755121471PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844987.10.0hypothetical protein CHLNCDRAFT_138406
TrEMBLE1ZMZ70.0E1ZMZ7_CHLVA; Uncharacterized protein
STRINGXP_005844987.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-42E2F transcription factor 1
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]