PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_1_00776
Common NameCHLNCDRAFT_133640
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 753aa    MW: 75445.1 Da    PI: 6.5944
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_1_00776genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP699.2e-2253126176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +Cqv+gC + l++   yh+++k+C +h +  +++++g + rfCq+C++f  l +f+ e++sCr  L++h  r+r +
  IGS.gm_1_00776  53 VCQVQGCPEPLES--PYHKKYKICPIHLHIGSIVLEGSRARFCQKCGHFQPLPDFEGERKSCRAALERHSLRQRLR 126
                     6**********86..7*****************************************************9998855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-1950113IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.46951126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-2053127IPR004333Transcription factor, SBP-box
PfamPF031107.3E-2454124IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MEWRSGDATW NPPRSERGPS GSAGQAAAQG ESADQARETP GKRRRRRFAG QQVCQVQGCP  60
EPLESPYHKK YKICPIHLHI GSIVLEGSRA RFCQKCGHFQ PLPDFEGERK SCRAALERHS  120
LRQRLRKAKP TGGGAGSGGG TGSSGGSGGG TSTPSASLFS SNDGSARQQQ QQPASGSASP  180
PPLPPQPSQV HQVQQVQQVQ QAPLPDPSLS GHREGEAAAS MPPSAAAAAA GAAPGEAALP  240
AGSTPGSASG EAGRERAGDA VLAVPQAADV LLTAPQAAAA AGPGGGTAAG PSAAPGAAPE  300
PAPERYVSPA QLYRLSLKIF GCTPDMLAPD ILRELLASLA IFPELVEAAL LQALRAPPAA  360
SRVLLQWQGQ VAWAAAGGGA AAAAAPGSLA EPRLQVQPAC IAAPAAGLPW PLVRLQLLGG  420
TRAAGPPVAL CRQAGRHLPV EAWGESEAAA AAGLAAARAA ALAAGSSGSG SGSSSDSNGE  480
EELPAAALAA PQEAAAVPPA IQPASRPWQQ WVRPVGLCPG SCELEVQLPL AGAAAAAAGG  540
DGGVLLSSPA PLLVLQDAAA AAEVQRLVQC SGGPGAQALD NLLRDVGLAA ALLEEGREQG  600
ADEPAAPPLP PAVVAAAACA AAGFAQRHGM PSLQRLLLTA AAAAGSATPA QPPASEQDEE  660
LSAALSLEVA KGKAEEGDQG PLLSDRQQAA LLSSQAARRT ECMKRDVESL EVQEWPGARG  720
AARGALAGPR LQRLCAALLA LFLALLLVRL LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-1354135686squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146KRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851959.10.0hypothetical protein CHLNCDRAFT_133640
TrEMBLE1Z3I10.0E1Z3I1_CHLVA; Uncharacterized protein
STRINGXP_005851959.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.28e-14squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]