PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_1_00755

Common Name

CHLNCDRAFT_133619

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

G2-like

Protein Properties

Length: 702aa MW: 69212.4 Da PI: 6.1977

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_1_00755	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	40.8	5e-13	14	67	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmk..vkgLtlehvkSHLQkYRl 55 l+W+ +L ++++ a+e+ GG + A Pk++l++++ + Ltl++vk HLQk R+ IGS.gm_1_00755 14 LKWSDDLQDAYLAALEKCGGLQDARPKQLLDMLQpsYPFLTLQNVKNHLQKQRT 67 89*****************************733678**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-12	9	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.91E-6	10	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-10	14	68	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MSGDDEGDHR RRYLKWSDDL QDAYLAALEK CGGLQDARPK QLLDMLQPSY PFLTLQNVKN 60 HLQKQRTKAA RHGGGGGGRA PASPGSDSQG EPMASEPTLS AGTAGTAGTA GTLGTADAPG 120 GMLGGPRPVP TIWLPDAFSA SDAQTNSLVD LAKRALALTV HQLALYRKLL EELEVDEGDH 180 AALVAALRED PTGQTVVLDA QRAASAASQG GGEDGRPARL RRLLARLLPP NPFSSGPKAE 240 AALKMAAWVA AVARHADGSG AAAGPFLAAA GGMLQPRLVA TPDAAGGASL AASATAAAPA 300 AAAAAGGPAG SSAAAAGLAG HDGAAAAAAA AAGRAGSAEM EEAPEGAAAV RRQRPDLQQR 360 RKRHKPLSEL LAEIPLQEPL HDAAQHAQQA QQAQQAQQAQ PGLPGLPPGG SAPVGMPGTS 420 PVGPAGAPLA GDTLGPTLSM QLQQHLQQQQ QHLQLQQHQA AAGGGTLLGA GQAQQAQQGM 480 GMQLEDDSMM LRALDAQASL RASYQLLPAP WIAHGACRCL RAGQSTASCC AMSSLLLQSV 540 SNALLRSAHD GGTVGEPGGE PGAGLPPPQA AAGLDAAFQA LGDEPLPAAS LDMGVLRSFL 600 DMLSSGGMSP FTSAGLPTLS ELVMAHSGGV GQAAEGQAPA GQAASGPSPP PAFLGMAGSG 660 LSGGAGGSGG SGGSGGSGGI GGGSFSAFTA PRPGGGAAGG Q*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MSGDDEGDHR RRYLKWSDDL QDAYLAALEK CGGLQDARPK QLLDMLQPSY PFLTLQNVKN  60
HLQKQRTKAA RHGGGGGGRA PASPGSDSQG EPMASEPTLS AGTAGTAGTA GTLGTADAPG  120
GMLGGPRPVP TIWLPDAFSA SDAQTNSLVD LAKRALALTV HQLALYRKLL EELEVDEGDH  180
AALVAALRED PTGQTVVLDA QRAASAASQG GGEDGRPARL RRLLARLLPP NPFSSGPKAE  240
AALKMAAWVA AVARHADGSG AAAGPFLAAA GGMLQPRLVA TPDAAGGASL AASATAAAPA  300
AAAAAGGPAG SSAAAAGLAG HDGAAAAAAA AAGRAGSAEM EEAPEGAAAV RRQRPDLQQR  360
RKRHKPLSEL LAEIPLQEPL HDAAQHAQQA QQAQQAQQAQ PGLPGLPPGG SAPVGMPGTS  420
PVGPAGAPLA GDTLGPTLSM QLQQHLQQQQ QHLQLQQHQA AAGGGTLLGA GQAQQAQQGM  480
GMQLEDDSMM LRALDAQASL RASYQLLPAP WIAHGACRCL RAGQSTASCC AMSSLLLQSV  540
SNALLRSAHD GGTVGEPGGE PGAGLPPPQA AAGLDAAFQA LGDEPLPAAS LDMGVLRSFL  600
DMLSSGGMSP FTSAGLPTLS ELVMAHSGGV GQAAEGQAPA GQAASGPSPP PAFLGMAGSG  660
LSGGAGGSGG SGGSGGSGGI GGGSFSAFTA PRPGGGAAGG Q*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005851948.1	0.0	hypothetical protein CHLNCDRAFT_133619
TrEMBL	E1Z3G6	0.0	E1Z3G6_CHLVA; Uncharacterized protein
STRING	XP_005851948.1	0.0	(Chlorella variabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.4	6e-07	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	17359028

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]