PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

IGS.gm_1_00371

Common Name

CHLNCDRAFT_133235

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 337aa MW: 34911.5 Da PI: 4.8811

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_1_00371	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.8	4.8e-08	201	245	6	50
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 er k + Re+A+rsRqRK a+++ Le + +L+ eN++L+ el+ IGS.gm_1_00371 201 TERIKKRRRESAQRSRQRKNAYMKSLEMENRALKMENERLRVELS 245 455566779********************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0035	198	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.507	198	246	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-6	200	245	IPR004827	Basic-leucine zipper domain
CDD	cd14686	1.33E-12	201	246	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-7	202	245	No hit	No description
SuperFamily	SSF57959	4.58E-6	203	245	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MCRFTVRAPP AGGPAAQPPD LKLEAPLDLD VLFEHGTEDL DANDLALLAL FSGNNAPAPA 60 AEKPSPVSSC AAAPTADASN TVVMGQALCV PAGPQGVLPV APPAAVPIAA PANPANPVQQ 120 LQFQAVMQHQ AAIMQNPQAY PAAAQMYQQA MLQQQQQQQM LAAQQQVAAA AAAAAGSLPV 180 PAPMLMGKRS VRSQEEVEEQ TERIKKRRRE SAQRSRQRKN AYMKSLEMEN RALKMENERL 240 RVELSKGGGG GGGMPASAFL PKASSGSVSR HESAGAACSG QQDGGSDHVS LSDDEEGVGL 300 CGDLAMGMPP LDASPADIAH DALALMPTAD LLNFAF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005851796.1	0.0	hypothetical protein CHLNCDRAFT_133235
TrEMBL	E1Z2N6	0.0	E1Z2N6_CHLVA; Uncharacterized protein
STRING	XP_005851796.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6903	4	4

Link Out ? help Back to Top
Entrez Gene	17359131

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]