PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

IGS.gm_198_00001

Common Name

CHLNCDRAFT_137531

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 265aa MW: 28256.3 Da PI: 6.925

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_198_00001	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.2	2.1e-11	233	256	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +Cr fa++G C+yGd+CkF H+p IGS.gm_198_00001 233 QICRQFAANGACNYGDKCKFKHVP 256 68********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.88E-7	226	254	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.558	229	257	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-7	230	256	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.2E-9	233	256	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-7	233	254	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MQQPGLTTSD VKDSPLTLVM GLPAPVAGGG GDGAELAALG YMFNDDGDSI QGGDKQVVRI 60 AGDEIARVIS ETGLHFVERN PIVVYAEEGQ AARLQTDISA GLEVKTRMLV GQTLEALRTQ 120 GTGNAFVVEA LLRQFLVELK AIYPPELGPL MDWLEQLLAT VRAAKPRAGE TMVEAAVHAG 180 CAYLKDELRK VSEKVLLMNL KRSNMFRPHA AQPSAGGAGY PKAARTDQRT DQQICRQFAA 240 NGACNYGDKC KFKHVPPRSG TPAP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005842671.1	0.0	expressed protein
TrEMBL	E1ZUF6	0.0	E1ZUF6_CHLVA; Expressed protein
STRING	XP_005842671.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17349972

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]