PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_17_00097 | ||||||||
Common Name | CHLNCDRAFT_136693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | SBP | ||||||||
Protein Properties | Length: 437aa MW: 46107.9 Da PI: 8.0697 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 59.8 | 7e-19 | 59 | 128 | 2 | 73 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 C+++gC++ l y ++++C + ++pv ++g +r+CqqCs+ h l+ fDe++r Cr L++h ++r IGS.gm_17_00097 59 CRIPGCSSKLDP--GYCTKYRICMRCKETPVLELEGGPHRWCQQCSKLHGLEAFDEGRRCCRASLHRHKSQR 128 9*******9985..8*****************************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-16 | 52 | 118 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 17.546 | 56 | 131 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.01E-16 | 58 | 130 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.8E-17 | 59 | 128 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MRKRLAGELP SEPAPSATSG SHQHSQPCGS TGGGTSSGST LSGDASPCKR HRSPSTRSCR 60 IPGCSSKLDP GYCTKYRICM RCKETPVLEL EGGPHRWCQQ CSKLHGLEAF DEGRRCCRAS 120 LHRHKSQRGL SKDKTQPALE QQPRQPPQRS RRSEAGAQEP AAAHHSLGQQ QQQQQAVQQQ 180 AFQQAPCLLP HASGLPSQPA CEVPSLRLPL PPPRFPAHPE AELAGPDPGS QPAEQQQWAV 240 LHNSMMMWMQ PRPEMVRLAL TQLQVDPPEA LWVPTEEELP QLTLAGSVPL YLAPSMAQPA 300 GGWQWGGGWQ WGGDSASRRP SAASSAFLHP LLGFAQAGWA PPGAQSWPGP ALSAPQPAAT 360 AMLSTAAATP AATAPAALRC DAFQGPASAV AASTSPAAAE QCPPGRPASS GGSIDIAATT 420 YALPPLQDDW TAMFLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 4e-15 | 55 | 128 | 2 | 77 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005845545.1 | 0.0 | hypothetical protein CHLNCDRAFT_136693 | ||||
TrEMBL | E1ZKV0 | 0.0 | E1ZKV0_CHLVA; Uncharacterized protein | ||||
STRING | XP_005845545.1 | 0.0 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 5e-15 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Entrez Gene | 17352929 |
Publications ? help Back to Top | |||
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