PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_17_00097
Common NameCHLNCDRAFT_136693
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 437aa    MW: 46107.9 Da    PI: 8.0697
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_17_00097genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP59.87e-1959128273
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 
                      C+++gC++ l     y  ++++C  + ++pv  ++g  +r+CqqCs+ h l+ fDe++r Cr  L++h ++r
  IGS.gm_17_00097  59 CRIPGCSSKLDP--GYCTKYRICMRCKETPVLELEGGPHRWCQQCSKLHGLEAFDEGRRCCRASLHRHKSQR 128
                      9*******9985..8*****************************************************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-1652118IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.54656131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-1658130IPR004333Transcription factor, SBP-box
PfamPF031105.8E-1759128IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MRKRLAGELP SEPAPSATSG SHQHSQPCGS TGGGTSSGST LSGDASPCKR HRSPSTRSCR  60
IPGCSSKLDP GYCTKYRICM RCKETPVLEL EGGPHRWCQQ CSKLHGLEAF DEGRRCCRAS  120
LHRHKSQRGL SKDKTQPALE QQPRQPPQRS RRSEAGAQEP AAAHHSLGQQ QQQQQAVQQQ  180
AFQQAPCLLP HASGLPSQPA CEVPSLRLPL PPPRFPAHPE AELAGPDPGS QPAEQQQWAV  240
LHNSMMMWMQ PRPEMVRLAL TQLQVDPPEA LWVPTEEELP QLTLAGSVPL YLAPSMAQPA  300
GGWQWGGGWQ WGGDSASRRP SAASSAFLHP LLGFAQAGWA PPGAQSWPGP ALSAPQPAAT  360
AMLSTAAATP AATAPAALRC DAFQGPASAV AASTSPAAAE QCPPGRPASS GGSIDIAATT  420
YALPPLQDDW TAMFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A4e-1555128277squamosa promoter binding protein-like 7
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005845545.10.0hypothetical protein CHLNCDRAFT_136693
TrEMBLE1ZKV00.0E1ZKV0_CHLVA; Uncharacterized protein
STRINGXP_005845545.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.25e-15squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]