PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_17_00096

Common Name

CHLNCDRAFT_136692

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 343aa MW: 36267.2 Da PI: 8.7864

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_17_00096	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	51.2	3.3e-16	65	134	2	73
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 C+++gC l+ +y+ ++ +C+ + +++v v+g+ +r+CqqCs+ h l+ f++++rsC+ L +h + r IGS.gm_17_00096 65 CRIPGCGGRLA--ASYNMKYCICNRCREQKVLDVHGVPHRWCQQCSKLHGLEAFEDARRSCKGSLLRHQQLR 134 99***9996..58***************************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.2E-15	58	124	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	16.067	62	137	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.84E-14	64	136	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.9E-16	65	134	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MVETPGGDVP FELDTLAADP ATTEHHNNAS EPSLATSGSH GEDGASCGSN PSSRQRGKQP 60 HRRQCRIPGC GGRLAASYNM KYCICNRCRE QKVLDVHGVP HRWCQQCSKL HGLEAFEDAR 120 RSCKGSLLRH QQLRWASSRR ATGGAAEEAQ EQRRARSPQA RPPPLPQLPP QLVQLAPSPW 180 ALLPPTPPPL AVAPASALHR QAGAPPRAPD LQLAHLALQQ LEADMPDTLW VPSAAQLDHF 240 NSQMGFQLEA SFATPPPALP PSLPPLALRG STAAGSSGNA SGCAAPAHTP LPTVVQALFI 300 GGEQAWPLAP GIAGLACAGQ AQRLMHPGLI TRKNGKTYRA LP*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MVETPGGDVP FELDTLAADP ATTEHHNNAS EPSLATSGSH GEDGASCGSN PSSRQRGKQP  60
HRRQCRIPGC GGRLAASYNM KYCICNRCRE QKVLDVHGVP HRWCQQCSKL HGLEAFEDAR  120
RSCKGSLLRH QQLRWASSRR ATGGAAEEAQ EQRRARSPQA RPPPLPQLPP QLVQLAPSPW  180
ALLPPTPPPL AVAPASALHR QAGAPPRAPD LQLAHLALQQ LEADMPDTLW VPSAAQLDHF  240
NSQMGFQLEA SFATPPPALP PSLPPLALRG STAAGSSGNA SGCAAPAHTP LPTVVQALFI  300
GGEQAWPLAP GIAGLACAGQ AQRLMHPGLI TRKNGKTYRA LP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005845544.1	0.0	hypothetical protein CHLNCDRAFT_136692
TrEMBL	E1ZKU9	0.0	E1ZKU9_CHLVA; Uncharacterized protein
STRING	XP_005845544.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-10	SBP family protein

Link Out ? help Back to Top
Entrez Gene	17353033

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]