PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_17_00084
Common NameCHLNCDRAFT_136680
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 304aa    MW: 32376.4 Da    PI: 6.4496
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_17_00084genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP104.29.6e-3393168277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      CqvegC + l+ +keyh+r+kvCe h k+p ++ +g++ rfCq C+rf  l++fD++krsCr +L++hn+rrrk+ 
  IGS.gm_17_00084  93 CQVEGCGMSLEALKEYHQRYKVCEEHLKTPYIIRDGQQVRFCQHCGRFQPLEDFDDNKRSCRVHLQRHNARRRKRP 168
                      *************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-2988154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114126.4190167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-3091170IPR004333Transcription factor, SBP-box
PfamPF031101.5E-3093166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEAHGEAYVN GTVEEQAAPQ ALQELQAAVQ DVHAMPVVVG AYQDALAEQA AAGTPADHGM  60
GDDTPGMHLG GMSGRGGRMS SGSFKNRTGP LYCQVEGCGM SLEALKEYHQ RYKVCEEHLK  120
TPYIIRDGQQ VRFCQHCGRF QPLEDFDDNK RSCRVHLQRH NARRRKRPRD GSAGGGDMGD  180
YVHHHATSAA AAAEMAKLAS SYAPAAIPIS PKEIQAMQEA LHFASTTLQH SSQVVTGKPA  240
GEEGGEGGGA VAMGPGSMPF VPAPDVMMLL LKGYAAMFHY TLDAATLRGL APPSDLPEQQ  300
LLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-2193170683squamosa promoter binding protein-like 7
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005845539.10.0hypothetical protein CHLNCDRAFT_136680
TrEMBLE1ZKT80.0E1ZKT8_CHLVA; Uncharacterized protein
STRINGXP_005845539.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.38e-24squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]