PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_17_00084 | ||||||||
Common Name | CHLNCDRAFT_136680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | SBP | ||||||||
Protein Properties | Length: 304aa MW: 32376.4 Da PI: 6.4496 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 104.2 | 9.6e-33 | 93 | 168 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 CqvegC + l+ +keyh+r+kvCe h k+p ++ +g++ rfCq C+rf l++fD++krsCr +L++hn+rrrk+ IGS.gm_17_00084 93 CQVEGCGMSLEALKEYHQRYKVCEEHLKTPYIIRDGQQVRFCQHCGRFQPLEDFDDNKRSCRVHLQRHNARRRKRP 168 *************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-29 | 88 | 154 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 26.41 | 90 | 167 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-30 | 91 | 170 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-30 | 93 | 166 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEAHGEAYVN GTVEEQAAPQ ALQELQAAVQ DVHAMPVVVG AYQDALAEQA AAGTPADHGM 60 GDDTPGMHLG GMSGRGGRMS SGSFKNRTGP LYCQVEGCGM SLEALKEYHQ RYKVCEEHLK 120 TPYIIRDGQQ VRFCQHCGRF QPLEDFDDNK RSCRVHLQRH NARRRKRPRD GSAGGGDMGD 180 YVHHHATSAA AAAEMAKLAS SYAPAAIPIS PKEIQAMQEA LHFASTTLQH SSQVVTGKPA 240 GEEGGEGGGA VAMGPGSMPF VPAPDVMMLL LKGYAAMFHY TLDAATLRGL APPSDLPEQQ 300 LLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 2e-21 | 93 | 170 | 6 | 83 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005845539.1 | 0.0 | hypothetical protein CHLNCDRAFT_136680 | ||||
TrEMBL | E1ZKT8 | 0.0 | E1ZKT8_CHLVA; Uncharacterized protein | ||||
STRING | XP_005845539.1 | 0.0 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 8e-24 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 17352928 |
Publications ? help Back to Top | |||
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