PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_17_00054

Common Name

CHLNCDRAFT_136650

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 1004aa MW: 98947.1 Da PI: 7.8784

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_17_00054	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	91.1	1.2e-28	133	205	3	75
SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 3 qvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 v+gC a+l +ak y+rr+++C+ h ++++ ++g+eqrfCqqC+rf ++ ef+ +++sCrr+L++hnerrr IGS.gm_17_00054 133 AVPGCGAELVTAKGYYRRYRICQLHCSMASMQMDGREQRFCQQCGRFQDIGEFEGSRKSCRRKLKRHNERRRV 205 699********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.1E-24	129	193	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	24.17	129	206	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.2E-27	133	204	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.1E-25	133	207	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0048653	Biological Process	anther development
GO:2000025	Biological Process	regulation of leaf formation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
MASVAPPSAS EAGDGQDRDA APLPPAGAGQ GAAEERAAAT AGDDTPGGAA GAPTSDAGAS 60 GSASGQLMHA QPAAAQPRGQ LAATGTAGTP AAAAAQAAAA GLAPPGPAAA RQQQAQQGPG 120 GRATAAATAA AAAVPGCGAE LVTAKGYYRR YRICQLHCSM ASMQMDGREQ RFCQQCGRFQ 180 DIGEFEGSRK SCRRKLKRHN ERRRVEYVRE SEEEEEEAQQ EESEATEERE EEALLGGSGA 240 GRRRRPHPAR SASAGVAAGS AGGTAGSRGR AARSGSDAAV AAVAAAASGA AAAAAAAAAS 300 AAGLQQSLRE GDAAAAAAAA AALPELPALM LPGPLGAAAG AAAPLLSVPI VAPQLLAAAQ 360 QQAQQRQAAQ QQGQAQQRQA AQQQGQAQQA QQAQQQQQWR QGQGQEQQAT SPVGSLPGMP 420 DLQLPASNSP FYLELPSPFL GSTPTSGAAP EAAGQLQQGT LTMPRGGSGA GAGAPPAGLA 480 PLVQRTASLQ EQLGIAHAHS QATAAAAAAA AGAQLAARGS LAGMAAGGGP MLEAQGSAVG 540 GAEAGAAAAV PAVAPLAAAG AGGAAAVPAE DLLVFNCAPD QLLPLVRAEL ERLTQASPAM 600 LEGYIRPGCT HLTLSLLLAW GEAEGLLARG LPLRRWLAGG ALGPLARHDM VVQFGGQLTT 660 LRGGQVAAAI DLRRPPAGLA AAGLPRLASL HPFCVLAGQP GVVTLSGTSI TGSRDLVLCR 720 QQGRHLAAEF HGAGCEGTSG GGGGGGGRED PGPLQPPPAK RARLAAAPAG REEEGRGGCS 780 SGRRQGCAAG RGPPNGRQPP EQLCIKPLGV LPGWVEVEVQ RGCVLSEPLP LLALPCAAAV 840 AEVRQLAADS AGICDAPAFL RRVGLVVQYL SRRQLAAAGH RVAPYPPATR QRIARMACQL 900 AEVAAGRGWH ALAALLHPAQ AAAAGGERHA GGCCGSSPAV APPAAAAVAL PPATAEAAAA 960 ACGAPPHSMP LSAAAAAGSG AQREPAPAPQ QQVEASSCCS IGS*

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

MASVAPPSAS EAGDGQDRDA APLPPAGAGQ GAAEERAAAT AGDDTPGGAA GAPTSDAGAS  60
GSASGQLMHA QPAAAQPRGQ LAATGTAGTP AAAAAQAAAA GLAPPGPAAA RQQQAQQGPG  120
GRATAAATAA AAAVPGCGAE LVTAKGYYRR YRICQLHCSM ASMQMDGREQ RFCQQCGRFQ  180
DIGEFEGSRK SCRRKLKRHN ERRRVEYVRE SEEEEEEAQQ EESEATEERE EEALLGGSGA  240
GRRRRPHPAR SASAGVAAGS AGGTAGSRGR AARSGSDAAV AAVAAAASGA AAAAAAAAAS  300
AAGLQQSLRE GDAAAAAAAA AALPELPALM LPGPLGAAAG AAAPLLSVPI VAPQLLAAAQ  360
QQAQQRQAAQ QQGQAQQRQA AQQQGQAQQA QQAQQQQQWR QGQGQEQQAT SPVGSLPGMP  420
DLQLPASNSP FYLELPSPFL GSTPTSGAAP EAAGQLQQGT LTMPRGGSGA GAGAPPAGLA  480
PLVQRTASLQ EQLGIAHAHS QATAAAAAAA AGAQLAARGS LAGMAAGGGP MLEAQGSAVG  540
GAEAGAAAAV PAVAPLAAAG AGGAAAVPAE DLLVFNCAPD QLLPLVRAEL ERLTQASPAM  600
LEGYIRPGCT HLTLSLLLAW GEAEGLLARG LPLRRWLAGG ALGPLARHDM VVQFGGQLTT  660
LRGGQVAAAI DLRRPPAGLA AAGLPRLASL HPFCVLAGQP GVVTLSGTSI TGSRDLVLCR  720
QQGRHLAAEF HGAGCEGTSG GGGGGGGRED PGPLQPPPAK RARLAAAPAG REEEGRGGCS  780
SGRRQGCAAG RGPPNGRQPP EQLCIKPLGV LPGWVEVEVQ RGCVLSEPLP LLALPCAAAV  840
AEVRQLAADS AGICDAPAFL RRVGLVVQYL SRRQLAAAGH RVAPYPPATR QRIARMACQL  900
AEVAAGRGWH ALAALLHPAQ AAAAGGERHA GGCCGSSPAV APPAAAAVAL PPATAEAAAA  960
ACGAPPHSMP LSAAAAAGSG AQREPAPAPQ QQVEASSCCS IGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-18	137	204	16	83	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	203	RRKLKRHNERRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00307	DAP	Transfer from AT2G42200	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005845530.1	0.0	hypothetical protein CHLNCDRAFT_136650
TrEMBL	E1ZKR9	0.0	E1ZKR9_CHLVA; Uncharacterized protein
STRING	XP_005845530.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	5e-14	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Entrez Gene	17352844

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]