PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_16_00276

Common Name

CHLNCDRAFT_136553

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

MYB_related

Protein Properties

Length: 507aa MW: 56271.3 Da PI: 4.4594

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_16_00276	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.9e-08	316	361	1	42
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcks 42 r++WT+eE+ l+d+vk++G g+W I + Rt+ ++k+ IGS.gm_16_00276 316 RLNWTAEEETELIDLVKLFGRGSWIEIRDKGAgvfdPLRTAVDLKD 361 89**********************9997664457776677777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-8	311	388	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.713	311	362	IPR017877	Myb-like domain
SuperFamily	SSF46689	9.72E-9	313	372	IPR009057	Homeodomain-like
CDD	cd11660	2.35E-9	319	388	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MEAGGQEDNT LVWALDRLLD LDKEELSMTV LASLLPSVVG SAEDLPDVTR AKLCLRLLDA 60 ELAAGRMDEA VLSYLQKLAG CDVAAVANTA VVWPSPELIL LVKTELGIQT WRDLKLPVEE 120 AEVVLNRLFA GNNTQESYTR YDQLRAALRS PVLAAALNEQ FPFQRSMGSA TYFVHKALVA 180 MPRSLLLAIQ DDVQVGRYEI GVGAKRGAAA LQDLGVGLAD LEQQGGQDPL PEMLQHAAAA 240 VAAAGGVPPG RHMRWTESPA VQHPMPEMEP ARIQQHVPLA QPTPARQQGR QQGRRAAAVQ 300 GHEQEDQEGG KRRRPRLNWT AEEETELIDL VKLFGRGSWI EIRDKGAGVF DPLRTAVDLK 360 DKCVLALYLR WQLMAPALAC CLWRNLVKTN KIEPQTLQEV EMREAEICDN LRKQKRVGRP 420 PKFVSPKPKR RRLGVPAVED VDDDDDDDEE EEEEDPVEDA DEGGEEDEAG DKETSAEDED 480 QQEARSQEEE EEEQKPQPRR SSRLQH*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MEAGGQEDNT LVWALDRLLD LDKEELSMTV LASLLPSVVG SAEDLPDVTR AKLCLRLLDA  60
ELAAGRMDEA VLSYLQKLAG CDVAAVANTA VVWPSPELIL LVKTELGIQT WRDLKLPVEE  120
AEVVLNRLFA GNNTQESYTR YDQLRAALRS PVLAAALNEQ FPFQRSMGSA TYFVHKALVA  180
MPRSLLLAIQ DDVQVGRYEI GVGAKRGAAA LQDLGVGLAD LEQQGGQDPL PEMLQHAAAA  240
VAAAGGVPPG RHMRWTESPA VQHPMPEMEP ARIQQHVPLA QPTPARQQGR QQGRRAAAVQ  300
GHEQEDQEGG KRRRPRLNWT AEEETELIDL VKLFGRGSWI EIRDKGAGVF DPLRTAVDLK  360
DKCVLALYLR WQLMAPALAC CLWRNLVKTN KIEPQTLQEV EMREAEICDN LRKQKRVGRP  420
PKFVSPKPKR RRLGVPAVED VDDDDDDDEE EEEEDPVEDA DEGGEEDEAG DKETSAEDED  480
QQEARSQEEE EEEQKPQPRR SSRLQH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	414	432	KRVGRPPKFVSPKPKRRRL
2	428	432	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005845926.1	0.0	expressed protein
TrEMBL	E1ZKL1	0.0	E1ZKL1_CHLVA; Expressed protein
STRING	XP_005845926.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3956	9	12

Link Out ? help Back to Top
Entrez Gene	17353182

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]