PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_16_00040
Common NameCHLNCDRAFT_136317
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 700aa    MW: 73560.9 Da    PI: 7.612
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_16_00040genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP348e-117394375
                     -TTTSSEEETTT--SS--S-STTTT-------S CS
              SBP 43 CqqCsrfhelsefDeekrsCrrrLakhnerrrk 75
                     C qC++fh ++ fDe++rsCr+ L++h +rrr+
  IGS.gm_16_00040  7 CLQCAHFHPVDAFDEGRRSCRHSLERHRQRRRE 39
                     99*****************************96 PP
2SBP60.93e-19294366276
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      C+v+gC+ +l+    + +r + Ce+hs+ p+  ++g++ rfCqqC+ fh+l+efD ++rsCrr L++h   rr +
  IGS.gm_16_00040 294 CRVPGCSRELKV--GFLQRCRCCEFHSREPQLELHGVTSRFCQQCGFFHALEEFDAQRRSCRRSLERHRVCRRLR 366
                      **********85..79****************************************************9766643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.614140IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-8639IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.106.5E-5727IPR004333Transcription factor, SBP-box
PfamPF031101.9E-8739IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.067291366IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.7E-17292353IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.95E-17293367IPR004333Transcription factor, SBP-box
PfamPF031109.5E-19294364IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MPAPACCLQC AHFHPVDAFD EGRRSCRHSL ERHRQRRREL LLRRQKEQQQ AEKEQQEEPQ  60
QRVAPKEQRP SKVGQTRQHH KPAAQQQQAP APASQKRQPA AATAAATISQ AASLPAAACL  120
APPAAAPLAV PPRGLSGQAP GSWQLAAACD FWSPAPLPPP PPLPQPGLHL AWAAQGAVQT  180
HHLHSPTAAS TDVPSTADIF GAESGLGLLD DPCTCPPGAA QWHAHADAAL WRVPPLLAAA  240
LPPVPPGLPG PGITCSMKAE ASTASGGSSE TGVDDGSSAG ATGQPLGALD RFSCRVPGCS  300
RELKVGFLQR CRCCEFHSRE PQLELHGVTS RFCQQCGFFH ALEEFDAQRR SCRRSLERHR  360
VCRRLRRQRA AEQKAREAAA GTVGDAACQA EGEDQSGESL PTPQLEEEVP AAAKGRSKRS  420
RRKGPAVVAA AVAAAQRAAA QDQPQAQPRR HSPQLSAGAE DSTMQVPQVQ AEPAQQQQGS  480
GSQRGSRKRW SAALAASPAA SPPDVATLPL LAPPCALPSE TPSVATVDGP EAEEAWQLGC  540
GQAAAAAAAA AAQLGPDAAL PPPHWAARAL AAADVAQQAA PAAAQPCLPP PAPGARLPAL  600
LFSDPWVTCA LPPPPPLPLV EEAMAILRAP TPVFNDVPSH AEMLEINAEL GLLDIIGHPP  660
HPGHSATGAT PAWLRLHWAL QQQQQEREQR AVWLTAQQH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005845837.10.0hypothetical protein CHLNCDRAFT_136317
TrEMBLE1ZK360.0E1ZK36_CHLVA; Uncharacterized protein
STRINGXP_005845837.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-09squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]