PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_14_00275
Common NameCHLNCDRAFT_135742
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family NF-YC
Protein Properties Length: 283aa    MW: 30502.4 Da    PI: 4.5655
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_14_00275genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC147.52.8e-46561622101
            NF-YC   2 lksfwekq.......iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                      l++fw++         e  +dfkn++lPlarikki+k+dedv+misaeaPvl+++ace+fi elt+rsw  a+e krrtl++sd+a+a++rtdi
  IGS.gm_14_00275  56 LRKFWAQMqtevdehSEVLQDFKNQALPLARIKKIMKSDEDVRMISAEAPVLFARACEFFIQELTIRSWSAAQEFKRRTLQRSDVATAIARTDI 149
                      78888765566666578889************************************************************************** PP

            NF-YC  89 fdflvdivprdel 101
                      fdflvdivpr+e 
  IGS.gm_14_00275 150 FDFLVDIVPREEA 162
                      **********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-2834153IPR009072Histone-fold
PfamPF008081.0E-2081144IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.2E-3582159IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTGQSQQQPA QQPAGGVGAQ QQLAGSGSGG ASLPYPAQPA TYMQQFYAQQ QLAEELRKFW  60
AQMQTEVDEH SEVLQDFKNQ ALPLARIKKI MKSDEDVRMI SAEAPVLFAR ACEFFIQELT  120
IRSWSAAQEF KRRTLQRSDV ATAIARTDIF DFLVDIVPRE EANELAGGDA AAAGQLAGVA  180
VPPMPLGQAP PMPLGLFPPG GQQGQQQQGF LPPPGQQQFL QPPPGQQQFL QQQQQQGAPG  240
NQGGGPGMLP YNLPPYMAPP PFSFQLGAPS QQQPGMQFPP PQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-45761591295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137RRTLQRS
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005846332.10.0hypothetical protein CHLNCDRAFT_135742
SwissprotQ9ZVL33e-49NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLE1ZIW80.0E1ZIW8_CHLVA; Uncharacterized protein
STRINGXP_005846332.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21951616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-47nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]
  2. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  3. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  4. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  5. Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M
    Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants.
    Mol Plant, 2017. 10(4): p. 645-648
    [PMID:27871811]
  6. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  7. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  8. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]