PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_14_00202
Common NameCHLNCDRAFT_135669
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 389aa    MW: 39972 Da    PI: 8.8717
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_14_00202genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-1088113127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt++C+ ++  G C+yGd+C++aHg+
  IGS.gm_14_00202  88 FKTRICNKWRN-GSCPYGDKCTYAHGE 113
                      69*********.*************96 PP
2zf-CCCH32.51.5e-10193218126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+lC  +++tG+C+  ++C+FaHg
  IGS.gm_14_00202 193 YKTRLCIKYMQTGYCHKAASCTFAHG 218
                      9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-1685118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-986119IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-887113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.18387114IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-888113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-14189225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-9190224IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601192220IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7193218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAMQPMQQMA PAAFAMMPAE AYASMQQGMH PEIMQGMPMQ MVMGPMGPMM AAGPMPPGMM  60
APGAMAAPQL TQMLVDAARG GRSSNVFFKT RICNKWRNGS CPYGDKCTYA HGEHELRYVP  120
PEIVAQLEAQ QKMQDSMQQR QGGGGGGGGE GPEQRPRGEE MGGGGGGGGG PCGPGGPPGA  180
MMGGGGAGHQ SFYKTRLCIK YMQTGYCHKA ASCTFAHGYE DLRQPGAPMS PGRMPQQDPM  240
SPGRMAGMAP AGMHMVPPGM MAGMPMGAGR GMPMGSPGGM PMPVPLPMPP GAMPGGGRYP  300
GPQQQQQQQM QRSPRGGGGY GGGGRKDPAS AARRRAAAMC QVAGVGGVGA EEPHPAAMQA  360
AMAEVRSGAA FRESAYADSV ADYVQGQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314324RGGGGYGGGGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005846476.10.0hypothetical protein CHLNCDRAFT_135669
TrEMBLE1ZIQ60.0E1ZIQ6_CHLVA; Uncharacterized protein
STRINGXP_005846476.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP551277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.19e-08C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]