PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_14_00157
Common NameCHLNCDRAFT_135624
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family GATA
Protein Properties Length: 594aa    MW: 60773.1 Da    PI: 5.1699
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_14_00157genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.54.9e-15555587133
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                      C++C + +Tp WR gp g+k+LCnaCG+++ k+
  IGS.gm_14_00157 555 CTQCYALSTPVWRAGPFGPKSLCNACGVRWMKY 587
                      ******************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.09E-11548588No hitNo description
PROSITE profilePS5011411.345549582IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-7549593IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-11553586IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.75E-8554587No hitNo description
PROSITE patternPS003440555580IPR000679Zinc finger, GATA-type
PfamPF003203.6E-13555588IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MEFDLEGMGL REPEDWTPAA RTDGEASLGA DFAEQDSLLD DCLSGHSLGA SLLGPCDSMG  60
AVDHFPCIAD ELEEQAKQLE GDWLNPSQLA ALADGKAVHL AGSGRASRLA LHAELKRMEQ  120
QQQQQRQQQQ QQQEKEQRSR PAEGAGPQRQ ASGVREEPVT PQRHSTANDS SWNESPLPGG  180
GAGLDAGEVQ SPDPVKLLSL PSGPSGAQRP PLAAAISNAQ SVRLGREPAP GAWRGCGRSA  240
WCSLEPRHGG ACTDCAAVPG LLAYPPLELF HSGVNIEELC RVPEELEEEA EAEGVPAPDT  300
ESEGEGGRPA AAAGCLSSGK RCAEAEADDG ASHSQSGGAA SSSSPGAAVE QPRPAGPAAK  360
RRRGGEVGSP AGGLAAALPD LAAAAAAALE PPPAMPVPEL ADGLGPPSLA AAAAAAMELS  420
LHPLLCMVPV ALPPPPPGAL DMPQFAPPVP PMPAPSLGAY LRNLGRPAGA PRLRPLPTAP  480
PPTPAEAKPV AAAAAAATPS KPVTRQKHTH TPSGAAAPAA PRSSGRRTVL QWHTDSVTDP  540
RTGAAITAVQ PGTFCTQCYA LSTPVWRAGP FGPKSLCNAC GVRWMKYAKG SKK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005846283.10.0expressed protein
TrEMBLE1ZIL70.0E1ZIL7_CHLVA; Expressed protein
STRINGXP_005846283.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP43691012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-09GATA transcription factor 16
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]