PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | IGS.gm_13_00158 | ||||||||
Common Name | CHLNCDRAFT_135230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family | SBP | ||||||||
Protein Properties | Length: 256aa MW: 26961.2 Da PI: 9.9466 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73.2 | 4.6e-23 | 39 | 114 | 1 | 75 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +CqvegC +dl+ +++++r+ ++Ce h++a vv+ ++g++ rfCqqC+r l +f+ ++rsC++ Lak +r ++ IGS.gm_13_00158 39 VCQVEGCGVDLTGLRNFFRKQRICELHARADVVTdTAGRQLRFCQQCTRLEPLINFNAGRRSCKTSLAKRQARAHR 114 6*******************************996789999****************************9999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.6E-22 | 35 | 102 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.905 | 37 | 115 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.08E-21 | 38 | 114 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.4E-24 | 40 | 113 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDPNLAGQWL QQSFSWDPSA LEARPAKAVP ARKAAGAAVC QVEGCGVDLT GLRNFFRKQR 60 ICELHARADV VTDTAGRQLR FCQQCTRLEP LINFNAGRRS CKTSLAKRQA RAHRGKAHSS 120 PDSSPERGGA PASGLGSSSS EGEGSLNASS GKGSSRRSGG AVLTSKRSRG SPPFSGAASP 180 GLAAMTSNES SRLASPGRYP ARLQQGMPAQ GQPQPQRLLP LPLQQGPEEM LWSSSLCEND 240 IEELLALDPG SYSYA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-11 | 34 | 106 | 5 | 76 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005846755.1 | 0.0 | hypothetical protein CHLNCDRAFT_135230 | ||||
TrEMBL | E1ZHS4 | 0.0 | E1ZHS4_CHLVA; Uncharacterized protein | ||||
STRING | XP_005846755.1 | 0.0 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 1e-16 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Entrez Gene | 17354075 |
Publications ? help Back to Top | |||
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