PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_12_00206
Common NameCHLNCDRAFT_134820
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family Whirly
Protein Properties Length: 1275aa    MW: 136136 Da    PI: 9.8325
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_12_00206genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly99.82.7e-31110312352137
           Whirly    2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrk 92  
                       +yk+kaa+ +k ++pt+e++ s  lk++r+G+llle+a ++++++ydW kk++f lsa e a +++   +++s e +hdp ++ ++eG+v k
  IGS.gm_12_00206 1103 IYKGKAAMAIKVIKPTWESIGS-GLKISREGTLLLEFAASVGPQQYDWTKKETFGLSALECAAVLEaADARQSFEALHDPNKGRGGEGTVYK 1193
                       9*******************55.589************************************99997889********************** PP

           Whirly   93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 
                        ++++P pd  G f++++ t s   ++ ++s  vs ae   + ++
  IGS.gm_12_00206 1194 KFNMRPAPD-KGWFFSIASTAS--GSQVNISCNVSDAELRLVTRV 1235
                       *********.59****999999..455568888899998776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3303.5E-234100IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549288.33E-24599IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010218.7171088IPR000504RNA recognition motif domain
CDDcd124132.13E-321189No hitNo description
SMARTSM003608.4E-231184IPR000504RNA recognition motif domain
PfamPF000763.9E-181282IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.1E-21273374IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.64E-19273362IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.238277354IPR000504RNA recognition motif domain
SMARTSM003607.5E-16278350IPR000504RNA recognition motif domain
CDDcd124141.51E-35278353No hitNo description
PfamPF000768.0E-11279347IPR000504RNA recognition motif domain
SuperFamilySSF549281.96E-23538636IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.3E-16539629IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010212.987540626IPR000504RNA recognition motif domain
SMARTSM003603.1E-12541622IPR000504RNA recognition motif domain
PfamPF000761.6E-9542601IPR000504RNA recognition motif domain
SuperFamilySSF549281.96E-23693774IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.6E-13694775IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010212.509696792IPR000504RNA recognition motif domain
CDDcd124163.42E-50696793No hitNo description
SMARTSM003603.6E-7697788IPR000504RNA recognition motif domain
PfamPF000762.3E-5699774IPR000504RNA recognition motif domain
Gene3DG3DSA:2.30.31.104.2E-4810901253IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.57E-2310971250IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.0E-4211031234IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1275 aa     Download sequence    Send to blast
MADAKKNDPR TVFVRGIDAS VTNEQLQEFF SEVGPVKNAF LVRRGKDGPH RGFGFVQFAV  60
QEDAERAAAE VPGKELAGRK LKVEGAVKRA PLEERKKRKQ SGTAAAPQQQ QQQQQHPAAE  120
VATAQAPAAK KPRPSKPAGK PSSAAATAAE AKHKWLRTVA IAGLTPEAVD SALQMARAAG  180
EVEEVIRPMP DQLGAQFKLR RDGCTGESLL AVYKTVKQAT MAVEQLHGQV AVAGGEPAAK  240
KQKKGGSKAA EAGGGGAAGC RVWARQLSGD GLHQKRWRLI VRNLPFTASE ADLRQAFAPA  300
GFVWELSLPR SASGRGRGFA FVGFTCKAHA ERGIRLVNAT VVAGRPVAVD WAVAKAQYDT  360
AQPEQEAGAA GEGGTAGAGV AGGSLRQLMG IDGVDSDSED DQAGPPAQMG HEGDDGEAAA  420
PVEPEQERRM LASVIDGILD GGGEEDEPEA AAEGLSESEE EDGSEDEDGD EAAQEESDSE  480
EGEEEEEEAD EEAPAASVAA ADPFSRSQLQ KKAEAAATAA AAVAPGADQG RQRAEPEADA  540
TVFIRGLPLD VGKEQVFLKM KVYGPVRSCR LVLDKDSGKL KGTAFVDFYR RASAQAASDA  600
CAKGRRKEGP GVVIGGRVAD VDLAVGQEEA RALAVAKAAE RGPRDSRRLA LAKEGQIVEG  660
SPAWEDMSAG DRAKRKRAAE EKKLKLKSPN FVVSDCRLSV RNVPTAWTEK QLKQAFIAAV  720
KERASKAQPQ VKQVKILMDE ERLGPDGTPR SKGIAFVEFT EHEHALCALR QLNNNPAAFS  780
KERRPIVEFA LENVKTLKLR ETKLGRSKQP REQQQHQQQQ ERQGAGGAAS GTGGSQQQQH  840
HQQGEKDGAE APEAKSKRKL RKERRLMLQE RRKEQKQQEA SGGGAAAANG TPASCEKSRS  900
AKRRELRKRR QEGQQGVAPA AAAPAVKTAP ATAAAAKPAK PAAGAKQQQQ QQQQQRPRLG  960
VNSRAAKVAA TSQQEQQTQR RKRSADELID KLAEGPKGKR ELRARKQRKK EQTDSVDQLA  1020
RQYLTKFFSD APAGAGKAGK GKGGSSGNAG AAAGQRSALK RWFEAQPQQR RASQQLRAQS  1080
TAAPPYWDDD SKPRVNVYSD YTIYKGKAAM AIKVIKPTWE SIGSGLKISR EGTLLLEFAA  1140
SVGPQQYDWT KKETFGLSAL ECAAVLEAAD ARQSFEALHD PNKGRGGEGT VYKKFNMRPA  1200
PDKGWFFSIA STASGSQVNI SCNVSDAELR LVTRVFDFVI PRLLGFDEHF AGAPSVVMPE  1260
SAAAAAPAEA AAPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A4e-281097124638190p24: plant transcriptional regulator PBF-2
1l3a_B4e-281097124638190p24: plant transcriptional regulator PBF-2
1l3a_C4e-281097124638190p24: plant transcriptional regulator PBF-2
1l3a_D4e-281097124638190p24: plant transcriptional regulator PBF-2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1673684KRKRAAEEKKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005847106.10.0hypothetical protein CHLNCDRAFT_134820
TrEMBLE1ZGV30.0E1ZGV3_CHLVA; Uncharacterized protein
STRINGXP_005847106.10.0(Chlorella variabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.21e-26ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]