PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold26818-abinit-gene-0.1-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18860.5 Da PI: 9.009 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.4 | 2.4e-38 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamssl 61 aC++Ck++r+kC ++C lapyfpa++ ++f+n+hklFG+sn+lk+++a++ ++r+++++s+ snap_masked-scaffold26818-abinit-gene-0.1-mRNA-1 10 ACSSCKHQRKKCDQNCELAPYFPASRYHEFQNAHKLFGVSNILKIMNAVELSQRQATAESI 70 7************************************************************ PP DUF260 62 vyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++e++ar +dPv+G++g+i++l++q+e +++l+ ++++ snap_masked-scaffold26818-abinit-gene-0.1-mRNA-1 71 LMEGNARRSDPVNGCLGIISNLKSQVEFYEKQLNIVNQH 109 **********************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.831 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-35 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MNREGGNPSA CSSCKHQRKK CDQNCELAPY FPASRYHEFQ NAHKLFGVSN ILKIMNAVEL 60 SQRQATAESI LMEGNARRSD PVNGCLGIIS NLKSQVEFYE KQLNIVNQHL AIYRGREKLE 120 RQNQKLEDSA NISSFASKPP LAPTPVQHNQ IDEFKLLSPI LPNLVRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-24 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-24 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023911605.1 | 1e-111 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A2N9EC89 | 4e-90 | A0A2N9EC89_FAGSY; Uncharacterized protein | ||||
STRING | XP_006475549.1 | 1e-52 | (Citrus sinensis) | ||||
STRING | XP_006451481.1 | 1e-52 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14432 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-37 | LOB domain-containing protein 22 |