PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 245aa MW: 27166.7 Da PI: 8.8843 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.3 | 7.9e-33 | 56 | 113 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrYkeClkNhAa++Gg+a+DGCgEfmps+g+egt++alkC+AC+CHRnFHR+e e+ snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1 56 KVVRYKECLKNHAATIGGNATDGCGEFMPSTGDEGTIEALKCSACNCHRNFHRKEIES 113 679****************************************************986 PP | |||||||
2 | Homeobox | 17.4 | 7.4e-06 | 177 | 234 | 1 | 54 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRak 54 +r Rt+ftkeq e + ++ e k +++ +++ ++ +++g++ r+ kvW +N + k snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1 177 KRFRTKFTKEQKEKMLSFAEkagwKMQKLEESTVQQFCQETGIKRRVLKVWMHNNKHK 234 789***********98766577778*****************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.3E-29 | 58 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-21 | 58 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.1E-32 | 59 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.941 | 60 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-30 | 167 | 236 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-20 | 174 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-26 | 176 | 232 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00106 | 177 | 234 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MNSSTQKGEM PFSRSCIHAG GNGHVVPYSE SQPSKSNSAD PPCPSPTLED HRPHKKVVRY 60 KECLKNHAAT IGGNATDGCG EFMPSTGDEG TIEALKCSAC NCHRNFHRKE IESHCSSQCY 120 HTPLILNNAI LGSPIGYPAN SLIVSYKSGS VPSESDEKDD DDDGCGVVAR PAEKVRKRFR 180 TKFTKEQKEK MLSFAEKAGW KMQKLEESTV QQFCQETGIK RRVLKVWMHN NKHKFALKKK 240 TPPAS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-23 | 177 | 233 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM462067 | 9e-43 | AM462067.2 Vitis vinifera contig VV78X194955.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023927442.1 | 1e-173 | zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 4e-62 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2N9F4F3 | 4e-98 | A0A2N9F4F3_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0004s14270.1 | 2e-97 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14440.2 | 6e-53 | homeobox protein 31 |