PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold16687-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 295aa    MW: 32470.4 Da    PI: 10.4046
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold16687-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.6e-11555146
                                                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                                   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                                      +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  snap_masked-scaffold16687-abinit-gene-0.3-mRNA-1  5 KQKWTAEEEAALKAGVLKHGAGKWRTILTDPEfsgilHLRSNVDLKDKWRN 55
                                                      79*****************************9*****88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.803161IPR017930Myb domain
SuperFamilySSF466896.06E-15266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-12456IPR009057Homeodomain-like
SMARTSM007176.2E-6459IPR001005SANT/Myb domain
PfamPF002492.0E-7555IPR001005SANT/Myb domain
CDDcd116601.50E-16657No hitNo description
SuperFamilySSF467858.71E-18117196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.817119187IPR005818Linker histone H1/H5, domain H15
SMARTSM005267.6E-13119182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.6E-15121189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.3E-10124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILTDPEFSGI LHLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRDLPTPK LDDNPISLSI VPQSDAEIVD AKPLVLARGT LQTADSKEPF  120
ARLDKLILEA ITNLKEPRGS DRAAIALYIE ERYWAPPNLK KLLSTKLKHM SANGRLIKIK  180
HKYRIASSST FSEKRRSSSL LVVEDRQKDS SRAEKREINI LTKTQVDAEL SKMKGMTAQE  240
AAAAAARAVA EAEAAIAEAE KAAREAEAAE AEAEAAQVFA KAAMKALKYG TLRAW
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919470.11e-169telomere repeat-binding factor 2 isoform X1
RefseqXP_023919471.11e-169telomere repeat-binding factor 2 isoform X1
SwissprotQ9FJW51e-89TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A2N9FPX61e-160A0A2N9FPX6_FAGSY; Uncharacterized protein
STRINGXP_008237807.11e-132(Prunus mume)
STRINGEMJ068341e-132(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.21e-82MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]