PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold15949-abinit-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 91aa MW: 10581.2 Da PI: 10.472 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5.1e-19 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++++G g W++++ + g++R++k+c++rw++yl snap_masked-scaffold15949-abinit-gene-0.5-mRNA-1 9 KGAWTEEEDIRLKQCIEKYGEGKWHLVPVHSGLNRCRKSCRLRWLNYL 56 79*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.329 | 4 | 60 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 6 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-15 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-17 | 9 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.03E-22 | 10 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.32E-11 | 11 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-7 | 60 | 83 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MSGSFGVRKG AWTEEEDIRL KQCIEKYGEG KWHLVPVHSG LNRCRKSCRL RWLNYLKPNI 60 KRGNFSADEV DLMLRLHKLL GNRQVSLANN N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-15 | 9 | 88 | 7 | 85 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023919949.1 | 5e-54 | transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 2e-40 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A2N9IFP5 | 2e-49 | A0A2N9IFP5_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0005s14490.1 | 2e-45 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 6e-43 | myb domain protein 113 |
Publications ? help Back to Top | |||
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