PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold13398-abinit-gene-0.2-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 99aa    MW: 11411.3 Da    PI: 10.2012
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold13398-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.4e-28958150
                                                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                                      krien++ rqvtfskRrng+ KKA+ELSvLCd++va+i+fs++g+l  +s
  snap_masked-scaffold13398-abinit-gene-0.2-mRNA-1  9 KRIENTTSRQVTFSKRRNGLTKKAYELSVLCDVDVALIMFSPSGRLSHFS 58
                                                      79********************************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.548161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-29281IPR002100Transcription factor, MADS-box
CDDcd002653.59E-34258No hitNo description
PRINTSPR004041.5E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTSRQVT FSKRRNGLTK KAYELSVLCD VDVALIMFSP SGRLSHFSGN  60
KSFCKGLLEI QQEIVGCKSQ LEDMENRLRY PFNGTYLYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-17159159Myocyte-specific enhancer factor 2B
1tqe_Q2e-17159159Myocyte-specific enhancer factor 2B
1tqe_R2e-17159159Myocyte-specific enhancer factor 2B
1tqe_S2e-17159159Myocyte-specific enhancer factor 2B
6byy_A3e-17159159MEF2 CHIMERA
6byy_B3e-17159159MEF2 CHIMERA
6byy_C3e-17159159MEF2 CHIMERA
6byy_D3e-17159159MEF2 CHIMERA
6bz1_A3e-17159159MEF2 CHIMERA
6bz1_B3e-17159159MEF2 CHIMERA
6bz1_C3e-17159159MEF2 CHIMERA
6bz1_D3e-17159159MEF2 CHIMERA
6c9l_A2e-17159159Myocyte-specific enhancer factor 2B
6c9l_B2e-17159159Myocyte-specific enhancer factor 2B
6c9l_C2e-17159159Myocyte-specific enhancer factor 2B
6c9l_D2e-17159159Myocyte-specific enhancer factor 2B
6c9l_E2e-17159159Myocyte-specific enhancer factor 2B
6c9l_F2e-17159159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4753222e-60AM475322.2 Vitis vinifera contig VV78X237798.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833820.11e-38PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
RefseqXP_018833821.19e-39PREDICTED: agamous-like MADS-box protein AGL104 isoform X2
SwissprotQ9LM462e-28AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA5BY192e-39A5BY19_VITVI; Uncharacterized protein
STRINGXP_007136729.14e-36(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.18e-31AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]