PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold13398-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 99aa MW: 11411.3 Da PI: 10.2012 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.4e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtfskRrng+ KKA+ELSvLCd++va+i+fs++g+l +s snap_masked-scaffold13398-abinit-gene-0.2-mRNA-1 9 KRIENTTSRQVTFSKRRNGLTKKAYELSVLCDVDVALIMFSPSGRLSHFS 58 79********************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.548 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-29 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.59E-34 | 2 | 58 | No hit | No description |
PRINTS | PR00404 | 1.5E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MGRVKLQIKR IENTTSRQVT FSKRRNGLTK KAYELSVLCD VDVALIMFSP SGRLSHFSGN 60 KSFCKGLLEI QQEIVGCKSQ LEDMENRLRY PFNGTYLYK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6byy_A | 3e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 3e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 3e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 3e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 3e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 3e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 3e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 3e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6c9l_A | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-17 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM475322 | 2e-60 | AM475322.2 Vitis vinifera contig VV78X237798.10, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833820.1 | 1e-38 | PREDICTED: agamous-like MADS-box protein AGL104 isoform X1 | ||||
Refseq | XP_018833821.1 | 9e-39 | PREDICTED: agamous-like MADS-box protein AGL104 isoform X2 | ||||
Swissprot | Q9LM46 | 2e-28 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A5BY19 | 2e-39 | A5BY19_VITVI; Uncharacterized protein | ||||
STRING | XP_007136729.1 | 4e-36 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 8e-31 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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