PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold12475-abinit-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

M-type_MADS

Protein Properties

Length: 100aa MW: 11657.4 Da PI: 9.5871

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold12475-abinit-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.5	4.1e-29	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rien++nrqvt+skRrng++KKA+EL vLCda+v++i++sstgk++ey snap_masked-scaffold12475-abinit-gene-0.3-mRNA-1 9 ERIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMVSSTGKVQEYV 58 69***********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.8E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.88	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.97E-38	2	80	No hit	No description
SuperFamily	SSF55455	1.02E-34	3	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-27	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MARGKIQIER IENTTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMVSS TGKVQEYVSP 60 STTTKQLIDE YQKAKETDIW SSHYEVLLQT IYFILYLYVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-15	1	59	1	59	MEF2C
5f28_B	2e-15	1	59	1	59	MEF2C
5f28_C	2e-15	1	59	1	59	MEF2C
5f28_D	2e-15	1	59	1	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023924416.1	3e-53	floral homeotic protein DEFICIENS
Swissprot	Q07472	1e-45	MADS1_PETHY; Floral homeotic protein PMADS 1
TrEMBL	D9ZJ43	1e-46	D9ZJ43_MALDO; MADS domain class transcription factor
STRING	EMJ28333	2e-45	(Prunus persica)
STRING	XP_010061014.1	2e-45	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2735	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-43	MIKC_MADS family protein

Publications ? help Back to Top
Immink RG, et al. Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] Kush A,Brunelle A,Shevell D,Chua NH The cDNA sequence of two MADS box proteins in Petunia. Plant Physiol., 1993. 102(3): p. 1051-2 [PMID:8278527]